1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGATGCTGCCGAGGATGCCGGTGCGGGTGCTGCTCGCTGAGGGCGACGACTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtctgtgccgcacagtttgtttttgatccggttaaattggttgactgcttttgttcattgttttttgctcgaattgttgtcacgagtggctaat...
species | Oryza sativa |
transcript | LOC_Os09g36220.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|29670836|gb|CB667111.1|CB667111
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|33676098|gb|CF304337.1|CF304337
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCC-CGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|58664572|gb|CK053258.1|CK053258
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|33678437|gb|CF306676.1|CF306676
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|29638275|gb|CB643284.1|CB643284
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|58689405|gb|CK078092.1|CK078092
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|29634410|gb|CB639419.1|CB639419
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|218502279|gb|FG970191.1|FG970191
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|29625624|gb|CB630635.1|CB630635
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|29635476|gb|CB640485.1|CB640485
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAATEST: gi|33676865|gb|CF305104.1|CF305104
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
EST: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAG TTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
genomic: CTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtct ... ggtcttgcagTTGCCGCAGCCTCTGATGGTGTGAAAGCGTGGGACATACTAAAGGAAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGATGCTGCCGAGGATGCCGGTGCGGGTGCTGCTCGCTGAGGGCGACGACTCCACGCGCCACATCATCTGCGCGCTGCTCCGCAAGTGCGGGTATCGAGgtgagcgtctgtgccgcacagtttgtttttgatccggttaaattggttgactgcttttgttcattgttttttgctcgaattgttgtcacgagtggctaat
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