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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTGGTGGCGCCGCTGGTGGTCGTCGTGTTCCTCTTCGTTCTCGCGCCGTCGATCTTCTTCGTCGCGTGCAATGGGGGCCACGTCGGCTCAGGTTCCGgtttgcatccccctcccccctcctgatgcgcggcgctgtcggttgttaatcgcatcctccgtcgcgaatgtagcatctagattgtttttttttttttaag

Basic information

species Oryza sativa
transcript LOC_Os09g36180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G379577_T01 (Zea mays), 5'ss of exon 1
GGCGTGGTGGCGCCGCTGGTGGTCGTCGTGTTCCTCTTCGTTCTCGCGCCGTCGATCTTCTTCGTCGCGTGCAATGGGGGCCACGTCGGCTCAGGTTCCGgtt-tgcatccccctcccccctcctgatgcgcggcgctgtc----ggttgttaatcgcatcctccgtcgcgaa-tgtagcat-ctagattgtttttttttttttaag--------------
                  |||||| |||||||||| |||||  ||||||| ||| |||||||||||| | ||||||| || | |   ||||  ||   |||    | | ||    || ||   | ||| ||||   |   |    |        | || |   ||| |||||  |||   || ||  ||||  || ||   |    |              
------------------GTGGTCCTCGTGTTCCTGTTCGTGGTCGCGCCTTCGCTCTTCTTCGTCGTGCGCAATGGCGGTCGC---GGCTACGGCCACGGCCACGTAGCCGTAGCCTCCGgtccgattcgcgttccctcctcgagagcacctgttgcttgtgccgacgcgaggtgttcaattctgcattgccttgttcgatgagcgccgagattgggtgg

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 1
GGCGTGGTGGCGCCGCTGGTGGTCGTCGTGTTCCTCTTCGTTCTCGCGCCGTCGATCTTCTTCGTCGCGTGCAATGGGGG------------CCACGTCGGCTCAGGTTCCGgtttgcatccccctcccccctcctgatgcgcggcgctgtcggt-tgttaat-cgcatcctccgtcgcgaatgtagcatctagattgtttttttttttttaag
            ||  |||||||| ||||||||||||||||  ||||||| ||| |||||||||||| | ||||||  ||            |||||||  |  ||  ||||||  | ||   | || || || | ||  | | |   | |   | |||  |  ||     |      |    || || | |    ||  |   |   || |  
------------CCCGTGGTGGTCCTCGTGTTCCTCTTCGTGGTCGCGCCTTCGCTCTTCTTCGTCGTGCGCAATGACGGTCGCGCCCACGCCCACGTCCACGTAGCCTCCGgtccg-atttgcatctcctcttcagagcccccgttttatttttgtgtcgacgcgaggtgtttaattctg-cgtcgcttgtgcgatgagtgcctaaattgagt