1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCCCGATCCCCTCTCGCCCTTAGGTAGGGGCTTCTCCCCAGTCCCCACCACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgatgatttgttctcgtctcggtgatctccctcctcgtcgtccttctccggcgcgtcgctttcgtgagtagatcggagatccgttcgggggttg...
species | Oryza sativa |
transcript | LOC_Os09g33810.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACGCGCGTNCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88594166|gb|CI711405.1|CI711405
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|58608747|gb|CK036780.1|CK036780
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29662509|gb|CB658784.1|CB658784
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88760364|gb|CI769920.1|CI769920
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|1631432|gb|C19161.1|C19161
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGNAAAGGGGAGEST: gi|88358556|gb|CI617642.1|CI617642
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG AACAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|27554079|gb|CA997979.1|CA997979
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88720913|gb|CI744212.1|CI744212
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29670241|gb|CB666516.1|CB666516
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29613548|gb|CB618561.1|CB618561
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88313743|gb|CI597374.1|CI597374
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88690767|gb|CI734846.1|CI734846
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29658731|gb|CB655006.1|CB655006
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88360017|gb|CI608531.1|CI608531
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAGTGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|33684353|gb|CF312592.1|CF312592
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|218480322|gb|FG970039.1|FG970039
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88395378|gb|CI611295.1|CI611295
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88358223|gb|CI605148.1|CI605148
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|569734|gb|D40583.1|D40583
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29617932|gb|CB622944.1|CB622944
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29627631|gb|CB632642.1|CB632642
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88356737|gb|CI619223.1|CI619223
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACAATAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|117234746|gb|CT847861.1|CT847861
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88731883|gb|CI753393.1|CI753393
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88329332|gb|CI653246.1|CI653246
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|58675502|gb|CK064189.1|CK064189
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88737129|gb|CI760637.1|CI760637
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29636054|gb|CB641063.1|CB641063
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|58592381|gb|CF990689.1|CF990689
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGCGCGTGGGCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|8859951|gb|AU097269.1|AU097269
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88692463|gb|CI736038.1|CI736038
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAACAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGAAAAGGGGAGEST: gi|88691623|gb|CI733701.1|CI733701
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACANGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88826631|gb|CI777196.1|CI777196
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|86901754|gb|CI310516.1|CI310516
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|29688694|gb|CB684969.1|CB684969
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|86891237|gb|CI305984.1|CI305984
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88356902|gb|CI620790.1|CI620790
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCGCCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88762075|gb|CI771631.1|CI771631
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAGEST: gi|88411125|gb|CI606344.1|CI606344
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
EST: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAG ACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
genomic: ACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgat ... cctttttcagACCAGAAGAAAAATGCAAAACCAGAGGGGTCTTCTGGCTCGCAAAGGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCCGATCCCCTCTCGCCCTTAGGTAGGGGCTTCTCCCCAGTCCCCACCACACGCGCGTGCGTGGCCGACGAGCACCCCAGGTTCGGATCGGATGGAAGgtatgatgatgatttgttctcgtctcggtgatctccctcctcgtcgtccttctccggcgcgtcgctttcgtgagtagatcggagatccgttcgggggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG