1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATGGAGACCTCATCTGTGGTTCTTGACACCTCTCCACAGGACAAGAAGAGGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAGgtagaaaagcacatgagcatgacagtgaaaaaacagtttctgaatctctttttttttcctttcaagaatacagcttcagataactttccaagatgaatttcttggctcatgtttctttgtttcatcatatgatgttgtgttgaacaatcag
species | Oryza sativa |
transcript | LOC_Os09g33580.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAG GAGGCAAAGGAGAATGGCAGGAAGAGGGGAGGGAAGAAACACAGCAGGGATEST: gi|58659898|gb|CK048578.1|CK048578
genomic: GGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAGgtagaaaagc ... gaacaatcagGAGGCAAAGGAGAATGGCAGGAAGAGGGGAGGGAAGAAACACAGCAGGGAT
EST: GGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAG GAGGCAAAGGAGAATGGCAGGAAGAGGGGAGGGAAGAAACACAGCAGGGATEST: gi|33684762|gb|CF313001.1|CF313001
genomic: GGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAGgtagaaaagc ... gaacaatcagGAGGCAAAGGAGAATGGCAGGAAGAGGGGAGGGAAGAAACACAGCAGGGAT
EST: GGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAG GAGGCAAAGGAGAATGGCAGGAAGAGGGGAGGGAAGAAACACAGCAGGGAT
genomic: GGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAGgtagaaaagc ... gaacaatcagGAGGCAAAGGAGAATGGCAGGAAGAGGGGAGGGAAGAAACACAGCAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGAGACCTCATCTGTGGTTCTTGACACCTCTCCACAGGACAAGAAGAGGAAGCCCAGGGAAGAAGACACTGCCAGCCTCAACTCTGCTCACTCCAAGgtagaaaagcacatgagcatgacagtgaaaaaacagtttctgaatctctttttttttcctttcaagaatacagcttcagataactttccaagatgaatttcttggctcatgtttctttgtttcatcatatgatgttgtgttgaacaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG