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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctgcgaatccgtgagctgagctgctgctgatttggggggtgttcgtt...

Basic information

species Oryza sativa
transcript LOC_Os09g32680.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 1
GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAG---TCGCCTCCGCCCTG--CCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctg-cgaatccgtgagctg-----agct--gctgctgatttggggggtgttcgtt--------------------------
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GCGATTCCTCCT-----CCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgtcgcccctggctgctgttgctgggatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88306627|gb|CI671386.1|CI671386
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG