Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctgcgaatccgtgagctgagctgctgctgatttggggggtgttcgttcgtgtgtgatcccgcggcgagcgagggcag

Basic information

species Oryza sativa
transcript LOC_Os09g32680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g32680.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 1
GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAG---TCGCCTCCGCCCTG--CCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctg-cgaatccgtgagctg-----agct--gctgctgatttggggggtgttcgttcgtgtgtgatcccgcggcgagcgagggcag
||  ||||       | || |||||||| |||| | |  || ||| ||   || ||    ||  |   ||||||||||||||||||||||||||||||||||||||||||| |||  |  || |  ||   ||| ||  | || |   |  ||| |   ||  |  |||| |  | |     ||||  || ||||||| ||| ||||| ||  | ||  ||   | |  ||  |   | ||||
GCGATTCCT-----CCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgt-cgcccctggctg---ctgttgctgggatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88672189|gb|CI726305.1|CI726305
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|218486157|gb|FG964429.1|FG964429
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|38568817|gb|CD671032.1|CD671032
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88573905|gb|CI665674.1|CI665674
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|87024052|gb|CI291705.1|CI291705
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88670127|gb|CI724243.1|CI724243
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88761182|gb|CI770738.1|CI770738
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88345571|gb|CI629832.1|CI629832
EST:     GCCTCCGCCCTGGCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88672567|gb|CI726683.1|CI726683
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88313296|gb|CI594926.1|CI594926
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88309145|gb|CI654764.1|CI654764
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88694968|gb|CI739006.1|CI739006
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88390329|gb|CI607365.1|CI607365
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88909071|gb|CI718379.1|CI718379
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88826715|gb|CI777280.1|CI777280
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88732334|gb|CI755511.1|CI755511
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88368731|gb|CI645189.1|CI645189
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88828064|gb|CI778629.1|CI778629
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88387197|gb|CI580542.1|CI580542
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88306131|gb|CI636509.1|CI636509
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88332007|gb|CI642232.1|CI642232
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|58688702|gb|CK077389.1|CK077389
EST:     GCCTCCG-CCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88360541|gb|CI608393.1|CI608393
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88372851|gb|CI640302.1|CI640302
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88959445|gb|CI716814.1|CI716814
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88739887|gb|CI761397.1|CI761397
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGGACA
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGC-GGACA
EST: gi|88571405|gb|CI662778.1|CI662778
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88389465|gb|CI600634.1|CI600634
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88574567|gb|CI666336.1|CI666336
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88362226|gb|CI608617.1|CI608617
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCCGGACA
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGG-CGGACA
EST: gi|88958928|gb|CI685739.1|CI685739
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88669768|gb|CI723884.1|CI723884
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88741845|gb|CI764350.1|CI764350
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88290448|gb|CI665237.1|CI665237
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88377693|gb|CI605528.1|CI605528
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88300294|gb|CI584713.1|CI584713
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|66920332|gb|CX107180.1|CX107180
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88395660|gb|CI590675.1|CI590675
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|58598688|gb|CK009216.1|CK009216
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|58657666|gb|CK046346.1|CK046346
EST:     GCTCCGCCCTGCCCACTGATGGCCGTCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: -CTCCGCCCTGCCCAC-GATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88360472|gb|CI608398.1|CI608398
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88351442|gb|CI627458.1|CI627458
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88828105|gb|CI778670.1|CI778670
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|29660227|gb|CB656502.1|CB656502
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88671988|gb|CI726104.1|CI726104
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAANTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88320137|gb|CI644729.1|CI644729
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88576455|gb|CI670600.1|CI670600
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88739870|gb|CI761380.1|CI761380
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88594716|gb|CI714674.1|CI714674
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88430967|gb|CI571957.1|CI571957
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|218483409|gb|FG950971.1|FG950971
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88594838|gb|CI714796.1|CI714796
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88673257|gb|CI726032.1|CI726032
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88590333|gb|CI709179.1|CI709179
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88300562|gb|CI587366.1|CI587366
EST:     GCCTCCGCCCTGGCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88737852|gb|CI760991.1|CI760991
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88743374|gb|CI766882.1|CI766882
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|58592302|gb|CF990610.1|CF990610
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88743467|gb|CI766975.1|CI766975
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACGG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88396093|gb|CI595641.1|CI595641
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|58601384|gb|CK011912.1|CK011912
EST:     CCTCCGCCCTGCCCACGATGGCCGACAACTTCTGGACGTCGTCGCACTTG                         GAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGGCCCCCAGGCGGACA
genomic: CCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCAC-TGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACA
EST: gi|88972652|gb|CI717378.1|CI717378
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88303299|gb|CI668947.1|CI668947
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|58694573|gb|CK083260.1|CK083260
EST:     G-CTCCGCCCTGCCCACGATGGCCG-CAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAG
EST: gi|88300050|gb|CI580111.1|CI580111
EST:     GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGGTGCTGGACCAGGTAGGACGTGGACAAGGTCCCCCAGGCGGACA
genomic: GCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGG-AGGACGTGGACAAGGTCCCCCAGGCGGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 69 (downstream exon)
Score: 15

GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtcc ... gcgagggcagCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATG




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