1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATGCCGGTGAAGAAGGGATCATCGGCCAACGCGGTCACCAAAGGCATCACGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGATgtactacctgaattctgtcccaaattctcgcaatttgagaagcgcattggttcgtccgagttgtgttttgtgacgcaattcgctgcctggattttacag
species | Oryza sativa |
transcript | LOC_Os09g28850.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGAT GTGGACAAGCTGAAGAAGAAGCTGAGGCACGAGGAGAACGTCCACCGAGCCEST: gi|117216859|gb|CT845238.1|CT845238
genomic: CGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGATgtactacctg ... gattttacagGTGGACAAGCTGAAGAAGAAGCTGAGGCACGAGGAGAACGTCCACCGAGCC
EST: CGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGAT GTGGACAAGCTGAAGAAGAAGCTGAGGCACGAGGAGAACGTCCACCGAGCCEST: gi|88719831|gb|CI741766.1|CI741766
genomic: CGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGATgtactacctg ... gattttacagGTGGACAAGCTGAAGAAGAAGCTGAGGCACGAGGAGAACGTCCACCGAGCC
EST: CGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGAT GTGGACAAGCTGAAGAAGAAGCTGAGGCACGAGGAGAACGTCCACCGAGCC
genomic: CGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGATgtactacctg ... gattttacagGTGGACAAGCTGAAGAAGAAGCTGAGGCACGAGGAGAACGTCCACCGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCCGGTGAAGAAGGGATCATCGGCCAACGCGGTCACCAAAGGCATCACGAACAGAATCCAAGCGAGGAGAGAGCGGAAGCTCGCACTGCAGCAAGATgtactacctgaattctgtcccaaattctcgcaatttgagaagcgcattggttcgtccgagttgtgttttgtgacgcaattcgctgcctggattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA