1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCCATGCGCCAGCGCTGATCTCCATCTCGCGAGGAGGGCAGAGCAGGGCGCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatccaaatcctctctctctctcccccacccgctttcgtctcgaatttgctttgcgtgcgttaaccctacagcttcctcttctagatctggaaga...
species | Oryza sativa |
transcript | LOC_Os09g24650.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTEST: gi|88761989|gb|CI771545.1|CI771545
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTT
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTEST: gi|88741408|gb|CI764916.1|CI764916
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTT
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTEST: gi|88288509|gb|CI661714.1|CI661714
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTT
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCCATTAGTGCCCCATCTATCTCGTACCAAGGACT
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATC-ATTAGTGCCCCATTTATCTCGTACCAAGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCATGCGCCAGCGCTGATCTCCATCTCGCGAGGAGGGCAGAGCAGGGCGCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatccaaatcctctctctctctcccccacccgctttcgtctcgaatttgctttgcgtgcgttaaccctacagcttcctcttctagatctggaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc