Sequence
atgc intronic sequence ATGC exonic sequenceTCGTGCGGAGGCAGCGGAAGGAGCTGCGCGCCCGCATCGCGGAGGTCGCGCGCGAGGAGGCCGAGCGGAAGCGCGTCCTCGGGGAGCGCTCCAATGCCAGgtacgcgaaatggcagtgcaattgactcgtgcaaagagggggagggggggtggggggggattagctctccatggtgggaatttcggtcttttgctttgct...
Basic information
species | Oryza sativa |
transcript | LOC_Os09g21780.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os09g21780.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G055917_T02 (Zea mays), 5'ss of exon 1
TCGTGCGGAGGCAGCGGAAGGAGCTGCGCGCCCGCATCGCGGAGGTCGCGCGCGAGGAGGCCGAGCGGAAGCGCGTCCTCGGGGAGCGCTCCAATGCCAGgtacgcgaaatggcagtgcaattgactcgtgcaaagagggggagggggggtggggggggattagctctccatggtgggaatttcggtcttttgctttgct-
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TCGTGAGGAGGCAGCGCAAGGAGCTCCGCGCGCGCATCGCGGAGGTCGCCAGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAGgtacctaaaattacagcggaattgtggggtacgtctaggcgattaaactgttgctacattcatgtatacatttttgcggcttgcaaaatcttg-tcagcaa
upper sequence: LOC_Os09g21780.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G116196_T01 (Zea mays), 5'ss of exon 1
TCGTGCGGAGGCAGCGGAAGGAGCTGCGCGCCCGCATCGCGGAGGTCGCGCGCGAGGAGGCCGAGCGGAAGCGCGTCCTCGGGGAGCGCTCCAATGCCAGgtacgcgaaatggcagtgcaattgactcgtgcaaagagggggagggggggtggggggggattagctctccatggtgggaatttcggtcttttgctttgct-
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TCGTGAGGAGGCAGCGCAAGGAGCTTCGCGCGCGCATCGCGGAGGTCGCCAGGGAGGAGGCGGAGCGCAAGCGCGTCCTCGGTGAGCGCTCCAATGCCAGgtacctgaaactatagcagaattgtggggttcttctaggcgatttaattgttgctacatccttgtattcagttttggggcttacaaaatctt-ctcagaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29687679|gb|CB683954.1|CB683954EST: CGCGAGGAGGCCGAGCGGAAGCGCGTCCTCGGGGAGCGCTCCAATGCCAG GCACAAACAAGTTATGCTTGAGGCATACGAACAGCAATGCGATGAAGCATG
genomic: CGCGAGGAGGCCGAGCGGAAGCGCGTCCTCGGGGAGCGCTCCAATGCCAGgtacgcgaaa ... ttggatttagGCACAAACAAGTTATGCTTGAGGCATACGAACAGCAATGCGATGAAGCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGTGCGGAGGCAGCGGAAGGAGCTGCGCGCCCGCATCGCGGAGGTCGCGCGCGAGGAGGCCGAGCGGAAGCGCGTCCTCGGGGAGCGCTCCAATGCCAGgtacgcgaaatggcagtgcaattgactcgtgcaaagagggggagggggggtggggggggattagctctccatggtgggaatttcggtcttttgctttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG