1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCGGAGTCCTACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctgcgcattgtctcgttagatccgagatgcccttgggattgcagtgttgaactgctggtggtagacttgggagttgttaatggatcggtttga...
species | Oryza sativa |
transcript | LOC_Os09g20630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAG TTATTAGCAAGAAGGCTTGTACTTEST: gi|88363156|gb|CI616313.1|CI616313
genomic: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctg ... caattcgcagTTATTAGCAAGAAGGCTTGTACTT
EST: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAG TTATTAGCAAGAAGGCTTGTACTTGEST: gi|88332988|gb|CI639836.1|CI639836
genomic: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctg ... caattcgcagTTATTAGCAAGAAGGCTTGTACTTG
EST: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAG TTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAEST: gi|88348614|gb|CI634209.1|CI634209
genomic: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctg ... caattcgcagTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAA
EST: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAG TTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAEST: gi|88302856|gb|CI668702.1|CI668702
genomic: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctg ... caattcgcagTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAA
EST: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAG TTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAEST: gi|88301894|gb|CI667740.1|CI667740
genomic: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctg ... caattcgcagTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAA
EST: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAG TTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAA
genomic: TCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctg ... caattcgcagTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGGAGTCCTACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGgtaaaatctgcgcattgtctcgttagatccgagatgcccttgggattgcagtgttgaactgctggtggtagacttgggagttgttaatggatcggtttga
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