1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAACTAGTTCTTGATTGGTTCTTGTCATCTTTGGGAGGACATTGCTCTGGGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgactatctaaattgtttgttgttgctatgtactaattacccttgcatttgggagctcataagtcataacattacttttctcttttgcag
species | Oryza sativa |
transcript | LOC_Os09g15170.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAG ATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCTEST: gi|88360507|gb|CI608433.1|CI608433
genomic: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgact ... tcttttgcagATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCT
EST: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAG ATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCTEST: gi|88363819|gb|CI610579.1|CI610579
genomic: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgact ... tcttttgcagATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCT
EST: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAG ATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCTEST: gi|88362037|gb|CI607037.1|CI607037
genomic: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgact ... tcttttgcagATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCT
EST: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAG ATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCTEST: gi|86903814|gb|CI302460.1|CI302460
genomic: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgact ... tcttttgcagATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCT
EST: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAG ATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCT
genomic: GGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgact ... tcttttgcagATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTAGTTCTTGATTGGTTCTTGTCATCTTTGGGAGGACATTGCTCTGGGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGgttcttgactatctaaattgtttgttgttgctatgtactaattacccttgcatttgggagctcataagtcataacattacttttctcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG