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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCGCCCGCCTCCGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCGCCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGgtagtacaactacactcgcagagattaccggccttgcatcagctagctataagctcaagctgctaaacatttcgattgcttttgaag

Basic information

species Oryza sativa
transcript LOC_Os09g12540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g12540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G131489_T01 (Zea mays), 5'ss of exon 1
TCGGCGCCCGCCTCCGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCGCCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGgt--agtacaa-ctacactcgcagagattaccggccttg-catcagctagctataagctcaagctgctaaacatttcgattgcttttgaag
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TGGGTGCCCGCCTCCGCCGCCGCCTCGAGGACAGGAAGGCCGCCGCAGCTGCCGAGGCTGACGCTCTCCGCGCTGCCTCGCGCGGCGCCCGTAACAACAGgtgcagtccgttctattgcttcattaaaaggggaacacgtcgtttgatttgtctgagctgtatccgagtggcaa--cgattgcag------