1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTCTTCCATCCTTCGCTCGCTCCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCGGCGCCTCTCCGCCGCCGCCTCAGCCATGgtgagcctccctctccctctctcatctcgccgcgacatctctctctctccgccgccttctcaccgatgcttctctcggtatggctctcttctgactcgcgattccgttgttgttcttggtggttcgcag
species | Oryza sativa |
transcript | LOC_Os09g08430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCCGCCGCCTCAAGCCATG GTNAAGTACTC-AAGGAAGCGACCAACCCCACCAAGTEST: gi|38471990|gb|CF956121.1|CF956121
genomic: TCCGCCGCCGCCTC-AGCCATGgtgagcctcc ... tggttcgcagGTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGT
EST: CTCGGCGCCTCTCCGCCGCCGCCTCAGCCATG GTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGTEST: gi|8858037|gb|AU095355.1|AU095355
genomic: CTCGGCGCCTCTCCGCCGCCGCCTCAGCCATGgtgagcctcc ... tggttcgcagGTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGT
EST: CGGCGCCTCTCCGCCGCCGCCTCAGCCATG GTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGTEST: gi|55411166|gb|CV723542.1|CV723542
genomic: CGGCGCCTCTCCGCCGCCGCCTCAGCCATGgtgagcctcc ... tggttcgcagGTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGT
EST: CGGCGCCTCTCCGCCGCCGCCTCAGCCATG GTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGTEST: gi|286646|gb|D15453.1|D15453
genomic: CGGCGCCTCTCCGCCGCCGCCTCAGCCATGgtgagcctcc ... tggttcgcagGTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGT
EST: CTCGGCGCCTCTCCGCCGCCGCCTCAGCCATG GTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGT
genomic: CTCGGCGCCTCTCCGCCGCCGCCTCAGCCATGgtgagcctcc ... tggttcgcagGTGAAGTACTCGAGGGAGGCGAACAACCCCACCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTTCCATCCTTCGCTCGCTCCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCGGCGCCTCTCCGCCGCCGCCTCAGCCATGgtgagcctccctctccctctctcatctcgccgcgacatctctctctctccgccgccttctcaccgatgcttctctcggtatggctctcttctgactcgcgattccgttgttgttcttggtggttcgcag
- - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - CTCCTC