1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTCCTCACCCGCGATCTCCTCTCCTCTCCGCCTAAACCCCCTCCCTCCTCCGCCTCGTTCACTCCGCCGCCGCCGCCGCCGCCAGATCCAGCAGCTTCAGgcaagcatctctctctctctctctctctcttccaaagcagcgtccgtgcttgccatccaccgcggcgccggccggaaacctccgcctgcgattcaaaggc...
species | Oryza sativa |
transcript | LOC_Os09g07830.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGATCCAGCAGCTTCAG GTCGGGGCTGAACCTTGGACTTGGAGCGGCCATGGCTTCGGACAACATTGGEST: gi|88387760|gb|CI585463.1|CI585463
genomic: AGATCCAGCAGCTTCAGgcaagcatct ... acttttgcagGTCGGGGCTGAACCTTGGACTTGGAGCGGCCATGGCTTCGGACAACATTGG
EST: GCCGCCGCCGCCGCCAGATCCAGCAGCTTCAG GTCGGGGCTGAACCTTGGACTTGGAGCGGCCATGGCTTCGGACAACATTGGEST: gi|88300828|gb|CI589820.1|CI589820
genomic: GCCGCCGCCGCCGCCAGATCCAGCAGCTTCAGgcaagcatct ... acttttgcagGTCGGGGCTGAACCTTGGACTTGGAGCGGCCATGGCTTCGGACAACATTGG
EST: AGATCCAGCAGCTTCAG GTCGGGGCTGAACCTTGGACTTGGAGCGGCCATGGCTTCGGACAACCATTG
genomic: AGATCCAGCAGCTTCAGgcaagcatct ... acttttgcagGTCGGGGCTGAACCTTGGACTTGGAGCGGCCATGGCTTCGGACAA-CATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTCACCCGCGATCTCCTCTCCTCTCCGCCTAAACCCCCTCCCTCCTCCGCCTCGTTCACTCCGCCGCCGCCGCCGCCGCCAGATCCAGCAGCTTCAGgcaagcatctctctctctctctctctctcttccaaagcagcgtccgtgcttgccatccaccgcggcgccggccggaaacctccgcctgcgattcaaaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT