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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTgtgagtgcccgtccacctgctcttgccttgtccatcgagatggcgttgtcacctccatggtttcttgtgtccctccactcag

Basic information

species Oryza sativa
transcript LOC_Os09g05020.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g05020.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G086418_T02 (Zea mays), 5'ss of exon 1
CGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTgtgagtgcccgtccacctgctcttgccttgtccatcgagatggcgttgtcacctccatggtttcttgtgtccctccactcag---
|||||||||||||||||||||| || ||||| ||||||||||| ||||| |||  ||||||| |||||||  | ||| | || || ||||||||||||||||||||  |   |||  | | |   |  || |   | |  |||  |||| |  ||    | ||||||  | |     |   |   
CGCTCAACTTCGCCATGGTGGACCACGGCGTGTACCGCTCCGGATTCCCGGACGCCTCCAACTTGCCGTTTCTTGAGACGCTCCGACTCCGCTCCGTCCTgtgagtctcgccccaaatccaccgac--tgccggcctat-tggttttgtgagttctgacggttcttggatgcgattgcgtcgcag

upper sequence: LOC_Os09g05020.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA02G43550.1 (Glycine max), 5'ss of exon 1
CGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTgtgagtgcccgt---ccacctgctcttgccttgtccatcgagatggcgttgtcacctccatggtttcttgtgtccctccactcag---------------------------------------------------------------------------------
| ||||||||||||||||| ||| ||||| | | ||||||||||||||||||   | ||||| |  | ||| || |  ||||  ||||||| ||| || |||  || | |      ||    | |||  ||| ||  ||    | |  |||| | ||  ||| |   ||      | | | | |                                                                                  
CCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctcacatctcaatcacccttttcttatct-tcttcttcgttttgttaacttgatgatgcttttgagtacccaattgatgaattgtgagtaaagtctcaatcttttccttgttgcacgctgttgctgattgtttttttgtttgattgggtgtttttatag