1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAACCTCCTCCTCCGACCCTGCCGCCAAGAAGAAAGCCATCCCCCGCCGCGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatgctcctaactttctaatttatttatgctattgatttttcttttggatctatctcatcgtgtaaatatttacag
species | Oryza sativa |
transcript | LOC_Os08g45240.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGEST: gi|88368173|gb|CI575055.1|CI575055
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGAGTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGEST: gi|88742490|gb|CI765998.1|CI765998
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCAACGACTGGCCCGACA ATGACTATCGCTTATTTGGTGGAGATEST: gi|38475426|gb|CF959559.1|CF959559
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGAT
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGEST: gi|33812852|gb|CF332314.1|CF332314
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGEST: gi|33684393|gb|CF312632.1|CF312632
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
EST: CGCCGCCGGCCAATTCTGGGAGGATCCCACCCTCACCGACTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGEST: gi|29670352|gb|CB666627.1|CB666627
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGEST: gi|86829522|gb|CI286725.1|CI286725
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
EST: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACA ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
genomic: CGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatg ... atatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACCTCCTCCTCCGACCCTGCCGCCAAGAAGAAAGCCATCCCCCGCCGCGCCGCCGGCCAATCCTGGGAGGATCCCACCCTCACCGACTGGCCCGACAgtatgtcatgctcctaactttctaatttatttatgctattgatttttcttttggatctatctcatcgtgtaaatatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT