Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTACCCAGCTCCCCGTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccccctctctactgtccctgctctgccccccctttatatcgaatctccaactaggaatacgcctttgcttcctgcaacgaactctctctctat...

Basic information

species Oryza sativa
transcript LOC_Os08g45040.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g45040.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G309269_T01 (Zea mays), 5'ss of exon 1
TGGTCAAGCT--CGCCGACGCCGGCAAGGACGCCGACGCTACCCAGCTCCCCGTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccccctctctactgtccctgctctgccccccctttat-atcgaatctccaactaggaatacgcctttgct---tcctgcaacgaactctctctctat
  ||    ||  | ||   ||  | | |  |  |  | || | |   | |||  |  |    |   | ||||||||  |    |   |  |  ||| | |  |||| |||||   |  | ||     |         |   ||| | |    | |   |     | ||  |  ||   |   || ||  || ||      ||    
CAGTTCTACTGCCTCCACTGCGAGTATGCGCTTCCCCTCTCCTCTCTTTCCCTCC--CTTCCATTCCACCGGTATGCTATTTCTTATCCTCTGCCAATACAGgtatatgcccgtacgttgctagttgtaaaaaaaaacgtttttctcaattcagcattagtggagcatgtgttttaattcattcgtggtacaaaaaacacct----

upper sequence: LOC_Os08g45040.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G491632_T01 (Zea mays), 5'ss of exon 1
TGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTACCCAGCTCCCCGTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccccctctctactgtccctgctctgccccccctttatatcgaatctccaactaggaatacgcctttgcttcctgcaacgaactctctctctat----
| |||||||| ||||||   ||||||||||| || || |   ||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||| ||  || |||| |  || ||   |  |||  || ||  | ||  | | | | |    || | |      | |  | |     | |   |  |      
TCGTCAAGCTGGCCGACCAGGGCAAGGACGCTGAAGCCAAGGAGCTCCCCGTCGATGAGGACCTCCCAGGCCTGGGACAGTTCTACTGCCTCCACTGCGAgtatgcgcttcccctctcc--tctctttccctcccttccattccaccgg-tatgctatttcttatcctctgccaatacaggta-tatgcccgtacgttgctagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10930850|gb|AU161124.1|AU161124
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCNCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTNAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88481172|gb|CI418443.1|CI418443
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88968130|gb|CI098372.1|CI098372
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88482388|gb|CI419659.1|CI419659
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88209643|gb|CI209492.1|CI209492
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88210131|gb|CI209980.1|CI209980
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88541194|gb|CI468448.1|CI468448
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88983481|gb|CI028708.1|CI028708
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|86531654|gb|CI171860.1|CI171860
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|86424810|gb|CI063571.1|CI063571
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88517526|gb|CI445180.1|CI445180
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|18386796|gb|BM419994.1|BM419994
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88206774|gb|CI206623.1|CI206623
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88976643|gb|CI024708.1|CI024708
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88538530|gb|CI467568.1|CI467568
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|86532738|gb|CI172944.1|CI172944
EST:     GTCGACGAGGACC-CCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|87016117|gb|CI281860.1|CI281860
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAACTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88259608|gb|CI363901.1|CI363901
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88211980|gb|CI211620.1|CI211620
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|86532343|gb|CI172549.1|CI172549
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88282773|gb|CI404169.1|CI404169
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTNTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88475240|gb|CI412511.1|CI412511
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88473793|gb|CI411064.1|CI411064
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|86253960|gb|CI058687.1|CI058687
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88503575|gb|CI431081.1|CI431081
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88416180|gb|CI538336.1|CI538336
EST:     TCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: TCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88490615|gb|CI427887.1|CI427887
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|55410315|gb|CV722691.1|CV722691
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88258795|gb|CI359185.1|CI359185
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88536183|gb|CI465913.1|CI465913
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88505747|gb|CI433253.1|CI433253
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88504257|gb|CI431763.1|CI431763
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88208507|gb|CI208356.1|CI208356
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88437876|gb|CI533833.1|CI533833
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88907785|gb|CI091183.1|CI091183
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|86531938|gb|CI172144.1|CI172144
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|33821057|gb|CF336333.1|CF336333
EST:     TCGACGAGGACCTCCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAGAGCG
genomic: TCGACGAGGACCT-CCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
EST: gi|88439803|gb|CI541360.1|CI541360
EST:     GTCGACGAGGACCTCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGA                         TCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG
genomic: GTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccc ... tcgcctgcagTCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTACCCAGCTCCCCGTCGACGAGGACCTCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGAgtatgtgccccctctctactgtccctgctctgccccccctttatatcgaatctccaactaggaatacgcctttgcttcctgcaacgaactctctctctat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct