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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTCGTCTTCCACGCCGGCCGCGCCCCCAAGGGCGAGCGCACCAACTGGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccatcccttcctatcttacccttaccttacctgctcatgtatcagattgacccatgtttcagattatatttctatttctcgccatatgtatccc...

Basic information

species Oryza sativa
transcript LOC_Os08g44820.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44820.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G125777_T02 (Zea mays), 5'ss of exon 1
GACCCTCGTCTTCCACGCCGGCCGCGCCCCCAAGGGCGAGCGCACCAACTGGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCC---CACCACAGgtccccccatcccttcctatcttacc-cttaccttacctgctcatgtatcag--attgacc-catgtttcagattatatttctatttctcgccatatgtatccc
    |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |   | ||        ||| |||||    | | || |  |   |||    |||||||| |   ||   ||   ||  ||  | | || ||     || || | || | || | |   ||| | |   
---GCTCGTCTTCCACGCGGGACGCGCCCCCAAGGGCGAACGCACCAACTGGGTCATGCACGAATACCGCCTCGAGGGCGATGACGCCGCAGGGATACCGCAGgtatatctacccgtatcccccttcttgcttaccttgcg-acttgcgtgctagtcatacatcacaagtccgtcatcatttatccagttgtagt-gtatttttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629364|gb|CB634375.1|CB634375
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|58691437|gb|CK080124.1|CK080124
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|29660833|gb|CB657108.1|CB657108
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|58672969|gb|CK061655.1|CK061655
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGC
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGC
EST: gi|29661739|gb|CB658014.1|CB658014
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|29621761|gb|CB626772.1|CB626772
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|117210558|gb|CT863552.1|CT863552
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|29676092|gb|CB672367.1|CB672367
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|29638320|gb|CB643329.1|CB643329
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGAATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|29621891|gb|CB626902.1|CB626902
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|88419397|gb|CI599230.1|CI599230
EST:     GGGTAATGCACGAGTACCGCCTCGACG-C-AAACCACCATCCCACCA-AG                         GATT-ATTC-TCGTGTGC-GTAT
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTAT
EST: gi|29625979|gb|CB630990.1|CB630990
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: gi|58665423|gb|CK054109.1|CK054109
EST:     GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG                         GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG