Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTGCCTCGTCCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctctctctccgtctccggccgcctccctcctcgatccgcaacctcacctcttccgattgtttgattgtattgtctttacgcgctgtacctcgcttcttctcactagttttttttttctgattttattctactgcag

Basic information

species Oryza sativa
transcript LOC_Os08g44380.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88674638|gb|CI728751.1|CI728751
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33665236|gb|CF296203.1|CF296203
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88728373|gb|CI751883.1|CI751883
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88317436|gb|CI628085.1|CI628085
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88673267|gb|CI726042.1|CI726042
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88340789|gb|CI636949.1|CI636949
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33823164|gb|CF337382.1|CF337382
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33694097|gb|CF322336.1|CF322336
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|38474906|gb|CF959039.1|CF959039
EST:     CCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88666143|gb|CI716299.1|CI716299
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88696082|gb|CI739657.1|CI739657
EST:     TCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|55439434|gb|CV733025.1|CV733025
EST:     CCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88317464|gb|CI628113.1|CI628113
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|87008403|gb|CI301161.1|CI301161
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|55433273|gb|CV729688.1|CV729688
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88689065|gb|CI732641.1|CI732641
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|55433210|gb|CV729649.1|CV729649
EST:     TCCCCTCTTCGCCTCTCCTCCGCCGGCGCCGTCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TCCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88675717|gb|CI729830.1|CI729830
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88972348|gb|CI717089.1|CI717089
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88665925|gb|CI716081.1|CI716081
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88905697|gb|CI712996.1|CI712996
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88594599|gb|CI714557.1|CI714557
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88317423|gb|CI628072.1|CI628072
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88674146|gb|CI728259.1|CI728259
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88984008|gb|CI723572.1|CI723572
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33655758|gb|CF278372.1|CF278372
EST:     CTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33671594|gb|CF299833.1|CF299833
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33822843|gb|CF337227.1|CF337227
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88688101|gb|CI731677.1|CI731677
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88744159|gb|CI767519.1|CI767519
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88905208|gb|CI712507.1|CI712507
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33659833|gb|CF282446.1|CF282446
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|24208887|gb|AU225914.1|AU225914
EST:     CGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33657180|gb|CF279794.1|CF279794
EST:     CCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88905412|gb|CI712711.1|CI712711
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|58675234|gb|CK063921.1|CK063921
EST:     CCTGCCCAAACCCTA-                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88665907|gb|CI716063.1|CI716063
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88671176|gb|CI725292.1|CI725292
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88973547|gb|CI717975.1|CI717975
EST:     TTCGCCT-NCCTCCNGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCC-GCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|87017186|gb|CI301222.1|CI301222
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|89173151|gb|CI720981.1|CI720981
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|2442273|gb|C74044.1|C74044
EST:     CTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88665819|gb|CI715975.1|CI715975
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88671907|gb|CI725849.1|CI725849
EST:     TTCGCCTCTCCTCCGCCGGCGCCGNCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88665908|gb|CI716064.1|CI716064
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88728051|gb|CI751561.1|CI751561
EST:     TCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88672772|gb|CI726888.1|CI726888
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88672355|gb|CI726471.1|CI726471
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88719546|gb|CI743056.1|CI743056
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|86859602|gb|CI288904.1|CI288904
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33655135|gb|CF277749.1|CF277749
EST:     CCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88677289|gb|CI729947.1|CI729947
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88673419|gb|CI727532.1|CI727532
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88593873|gb|CI713827.1|CI713827
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88674563|gb|CI728676.1|CI728676
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88905333|gb|CI712632.1|CI712632
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33662471|gb|CF293438.1|CF293438
EST:     CTCTTCGTCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88675347|gb|CI727462.1|CI727462
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|89172409|gb|CI721468.1|CI721468
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88669467|gb|CI723385.1|CI723385
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88594804|gb|CI714762.1|CI714762
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88675245|gb|CI727360.1|CI727360
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|55437784|gb|CV732184.1|CV732184
EST:     CCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88671066|gb|CI725182.1|CI725182
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88983956|gb|CI723524.1|CI723524
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88674720|gb|CI728833.1|CI728833
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|33664770|gb|CF295737.1|CF295737
EST:     GTCCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: GTCCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88688713|gb|CI732289.1|CI732289
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|86595674|gb|CI288367.1|CI288367
EST:     CCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|218488573|gb|FG946164.1|FG946164
EST:     GCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: GCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88676485|gb|CI730598.1|CI730598
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88688384|gb|CI731960.1|CI731960
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88673331|gb|CI725956.1|CI725956
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88675243|gb|CI727358.1|CI727358
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88308934|gb|CI654217.1|CI654217
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88317397|gb|CI628046.1|CI628046
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88347630|gb|CI634315.1|CI634315
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|86906445|gb|CI294568.1|CI294568
EST:     CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: CTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88691648|gb|CI733726.1|CI733726
EST:     TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG
EST: gi|88352043|gb|CI626043.1|CI626043
EST:     TCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCAAAACCCTAG                         AGTGTTGTTGAGTTATCGGCCGCAAACATGAG
genomic: TCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctc ... tctactgcagAGTGTTGTTGAGTTATCGGCCGCAAACATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCTGCCTCGTCCCCTCTTCGCCTCTCCTCCGCCGGCGCCGCCCCTGCCCAAACCCTAGgtgaggtctctctctccgtctccggccgcctccctcctcgatccgcaacctcacctcttccgattgtttgattgtattgtctttacgcgctgtacctcgcttcttctcactagttttttttttctgattttattctactgcag

- - - - - - - - - - - - - CTCCTC