Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTCCATCGTCGTCTCCCTCCTCTTGTCCCACTCCGACTCCGACATGGCGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgccaccctcctcctctactctcttcaatacgcgcttgccttctcatggccatcacatcatctcactcacacgatcgatgaactcattttcattttgatttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os08g44340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88344389|gb|CI677431.1|CI677431
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88721114|gb|CI744413.1|CI744413
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58591551|gb|CF989859.1|CF989859
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58670757|gb|CK059443.1|CK059443
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|33653794|gb|CF276408.1|CF276408
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88354143|gb|CI637709.1|CI637709
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58672555|gb|CK061241.1|CK061241
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88717903|gb|CI739415.1|CI739415
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58689760|gb|CK078447.1|CK078447
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88722467|gb|CI745977.1|CI745977
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88408710|gb|CI686220.1|CI686220
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88363053|gb|CI616210.1|CI616210
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58665042|gb|CK053728.1|CK053728
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58594766|gb|CF993074.1|CF993074
EST:     CGGGCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88575546|gb|CI669691.1|CI669691
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88408685|gb|CI686192.1|CI686192
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTNGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58599157|gb|CK009685.1|CK009685
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88330972|gb|CI638380.1|CI638380
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88586453|gb|CI704154.1|CI704154
EST:     CGGNCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|29636698|gb|CB641707.1|CB641707
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58591384|gb|CF989692.1|CF989692
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88693460|gb|CI737035.1|CI737035
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGNG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|117233824|gb|CT847763.1|CT847763
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAACCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|58586261|gb|CF984569.1|CF984569
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGCGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88353573|gb|CI632964.1|CI632964
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|66912833|gb|CX099681.1|CX099681
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
EST: gi|88744711|gb|CI768071.1|CI768071
EST:     CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCG                         GGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC
genomic: CGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 57 (downstream exon)
Score: 12

CCCCTCCATCGTCGTCTCCCTCCTCTTGTCCCACTCCGACTCCGACATGGCGGCCGCGAAGCACTTCACCTACGTCATCCTCGGCGGAGGCGTCGCCGCGgtaacatcgc ... atttgtgcagGGATACGCTGCGCGGGAGTTCGCCAAGCAGGGCGTCAAGCCCGGGGAACTCGCCATCATCTCCAAGGAATCG




<











<


<