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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTCGCCGCCGTCGCGCTGCTCTACGTCTCCCCGCCGCCGCTCATCGATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTGgtggtgttgcactagtaccccttcctacctgctccccacgcttatcccgatctaatttgtcttgctctgtgcattccgagtgcag

Basic information

species Oryza sativa
transcript LOC_Os08g44015.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44015.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G131699_T01 (Zea mays), 5'ss of exon 1
CCTCCTCGCCGCCGTCGCGCTGCTCTACGTCTCCCCGCCGCCGCTCATCGATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTGgtg--gtgttgcactagta---------ccccttcctacctgctccccacgcttatcccgatctaatttgtcttgctctgtgcattc-cgagtgcag
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CCTCCTCGCCGCCGTCGCGCTGCTCTACGTCTCCCCGCCGCCGCTCGCAGACCACCCCGTGCTCGCTTCCTCCCGCCGCCGCCGCTCGGCCCATACCTTGgtatcgcatcgcactagtaacctagccgcctctgctttttttttcccttcacatctctcgatctaacctatcttgctttatgctctcgctcgctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88335878|gb|CI645479.1|CI645479
EST:     ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTG                         CTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT
genomic: ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTGgtggtgttgc ... ccgagtgcagCTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT
EST: gi|88307381|gb|CI642026.1|CI642026
EST:     ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTG                         CTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT
genomic: ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTGgtggtgttgc ... ccgagtgcagCTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT