Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaacccgccccctccccttcgccggatctcacccgcggatcgatctcccccccaaatccag

Basic information

species Oryza sativa
transcript LOC_Os08g43540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G050467_T01 (Zea mays), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaa-----cccgccccctccccttcgccggatctcacc-cgcggatcgatctcccccccaaatccag-------------------
||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||| ||       ||| | ||||||| | | || ||||||    | | |  ||    | | |||||||||                     
AGGCCGTCCGCAAGGGCAACGCCGCTGTCGGCGTCCGCGGTGTCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCCAGGACTCCAGgtcggtccgtcggtacctccccctccctcccatccaccagatctcttgaccccgggcgccgcctcacccaaatcctcccccaaaaaatctccgcag

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA02G05190.1 (Glycine max), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgta-----aatcct-tcaacccgccccctccccttcgcc----ggatctc---acccgcggat--cgatctcccccccaaatccag--------------
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||     | || | ||||  | |||| | || ||| |      | | |    | | ||  ||     | |      || |                   
AAGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACAACGTCGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAGCTCCAAGACTCCAGgtaccactactcttatcaattcccccctttcctttcccttattaggttttttaatcggcaaatgttagttttgttagcagagaggattttccctcttccc

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA16G23580.1 (Glycine max), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgta--aatccttcaacccgccccctccccttcgc--cggatctcacccgcggatcgatctcccccccaaatccag--------------------------
| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| |||| ||||| |||||||||||  | | ||     |    |  | |||| ||   | |||| |   | |   |||||  |        | |||                           
AAGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACAATGTTGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAACTCCAAGACTCCAGgtactactactcttttcaattcaattccctccgtttcagatccctttcccct-tcgattactagggattaaccaagaaaactacgtgttataaggagaagg

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT5G66140.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaacccgccccctccccttcgccggatctcacccg--cggatcgatctcccccccaaatccag---------------------------
| |||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| || ||||      | || | |  | | |       | |     | | | |    |  |  ||| |       |||| |                           
AAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCGACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGgttttatttccatctcttcacttttatcatggcaccaattaacagacttgccctctctacttattggatcctgcttggtttactctcagttgctagttga

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT3G51260.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaacccgccccctcc------ccttcgccggatctcacccgcgga---tcgatctcccccccaaatccag--------------------
| |||||||| ||||| |||||||||||||| ||||||||||| || || |||||||||| |||||| |||||||||||||| ||||||||||| ||||||||   |    | | |  ||  | |      | |   |||||| |   ||    |   | | |    | |    ||   |                    
AAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACAGATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATTCCAGgtattgctccgatctctaccgatacaagatgcttaaaccggatttagtccatttacttttgtttctgcactttgattttggttttaagcttcacctggat

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv03s0038g02300.t01 (Vitis vinifera), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatc-cttcaacccgccccctccccttcgccgg--atctcacccgcggatcg--atctcccccccaaatccag------------------------
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| | ||||||||||||||  ||||  || ||||  | |  |   | | | |   | |  ||          |||||  |  ||     ||  |   |                        
AAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGgtacctctcttcctctctacgattacgcattttcagtgattgtggtttaagatcgtgaattctgagtcagcttttgaacctatctgatggtttctgtggc

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv04s0023g03690.t01 (Vitis vinifera), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaa--tccttcaacccgccccctccccttcgccggatctcacccgcggatcgatctcccccccaaatccag---------------------------
| |||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||| |||| ||||| || |||||||     |  ||||     |    |    |||      |||         | | |  |          |   |                           
AAGCCGTCCGTAAAGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAAAAGTCCACCGCCAAACTCCAAGATTCCAGgtctccttttttcatttttcatttttattttctttttttcttgtgtaaataccaaaatgaaggtagggttagggtttgatggttttggagacatccatgt

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ31080 (Selaginella moellendorffii), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaacccgccccctccccttcgccggatctcacccgcggatc-gatctcccccccaaatccag
||||||| ||||||||||||||||||||||||||||||||||| |||||  |||| |||||||| ||||||||||||||| |||||||||||||| | ||||   |    |   | |  | ||   | ||      |||  | |  |  || ||  || |   | |      
AGGCCGTGCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACTGACACAATCGTGCTCGGCGTGGAGAAGAAATCCACCGCCAAGCTCCAGGACGCGAGgttcgtttccc--tctgatctctagacctctagatttctagctcctgattccgaaatctctgtccag-----

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ34636 (Selaginella moellendorffii), 5'ss of exon 1
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaacccgccccctccccttcgccggatctcacccgcggatc-gatctcccccccaaatccag
||||||| || |||||||||||||||||||||||||||||||| |||||  |||| |||||||| ||||||||||||||| |||||||||||||| | ||||   |    |   | |  | ||   | ||      |||  | |  |  || ||  || |   | |      
AGGCCGTGCGAAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACTGACACGATCGTGCTCGGCGTGGAGAAGAAATCCACCGCCAAGCTCCAGGACGCGAGgttcgtttccc--tctgatctctagacctctagatttctagctcctgattccgaaatctctgtccag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25798817|gb|CA754778.1|CA754778
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88365468|gb|CI680107.1|CI680107
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCANATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|29656751|gb|CB653026.1|CB653026
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|86902230|gb|CI302261.1|CI302261
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88337546|gb|CI630843.1|CI630843
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGGCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88333865|gb|CI645279.1|CI645279
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88324140|gb|CI563751.1|CI563751
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88347404|gb|CI632689.1|CI632689
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88347092|gb|CI631172.1|CI631172
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88345884|gb|CI632357.1|CI632357
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCAAG                         GTNCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88337530|gb|CI630827.1|CI630827
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|86829834|gb|CI288530.1|CI288530
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88359566|gb|CI621097.1|CI621097
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88352815|gb|CI678840.1|CI678840
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|33657667|gb|CF280281.1|CF280281
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|218492192|gb|FG944278.1|FG944278
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|33654965|gb|CF277579.1|CF277579
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88310630|gb|CI672491.1|CI672491
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88591190|gb|CI708110.1|CI708110
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|33823569|gb|CF337591.1|CF337591
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCTTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88587724|gb|CI704436.1|CI704436
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88382313|gb|CI633171.1|CI633171
EST:     GTCGTCCTCGGNGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|33657346|gb|CF279960.1|CF279960
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88375459|gb|CI681232.1|CI681232
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|325493448|gb|JG457972.1|JG457972
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|86829884|gb|CI288566.1|CI288566
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88410402|gb|CI686331.1|CI686331
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88571299|gb|CI662672.1|CI662672
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGATCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|86906661|gb|CI291140.1|CI291140
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGC
EST: gi|33805153|gb|CF328454.1|CF328454
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|87012256|gb|CI293306.1|CI293306
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCAGCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGA
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGA
EST: gi|88347730|gb|CI655083.1|CI655083
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|88337689|gb|CI632191.1|CI632191
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCAAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: gi|33665451|gb|CF296418.1|CF296418
EST:     GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG                         GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCG
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 43

AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCGGGGCTCAAGGCGGACGCCCGCGTGCTCATCAACCGGGCGCGCGTCGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGCCGTCCGCAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatccttcaacccgccccctccccttcgccggatctcacccgcggatcgatctcccccccaaatccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT