1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGGGGAGGAGGAGGAGGAGGGGGATGAGGAGCTGGTGGGCGGCGACTACGAGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGgtgaggatttttttggtcggaagcagatcaggtggtggactggtggtggtgtttttttttcttttttcttttttttagcaggaagcgcgacggtcgattt...
species | Oryza sativa |
transcript | LOC_Os08g42740.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAG AGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGATEST: gi|88312074|gb|CI580239.1|CI580239
genomic: AGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGgtgaggattt ... ctatggacagAGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGAT
EST: GGTGTCCCGCCGCGAGCAG AGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGATEST: gi|29622679|gb|CB627690.1|CB627690
genomic: GGTGTCCCGCCGCGAGCAGgtgaggattt ... ctatggacagAGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGAT
EST: AGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAG AGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGATEST: gi|29669832|gb|CB666107.1|CB666107
genomic: AGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGgtgaggattt ... ctatggacagAGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGAT
EST: AGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAG AGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGAT
genomic: AGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGgtgaggattt ... ctatggacagAGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGAGGAGGAGGAGGAGGGGGATGAGGAGCTGGTGGGCGGCGACTACGAGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGgtgaggatttttttggtcggaagcagatcaggtggtggactggtggtggtgtttttttttcttttttcttttttttagcaggaagcgcgacggtcgattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG