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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct...

Basic information

species Oryza sativa
transcript LOC_Os08g41950.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct-
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |        |     |   ||| | |  ||    | |   |      ||||  | |   | | |  ||     |  |    |  | || ||  |   
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgc-cgggcagtggtcacacggcgctggagtgccttgg

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA18G50900.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctt--tcgattggatct
||||||| || || ||||| || || ||||| || || ||||| ||||||||||||||||||||||| |||||||| || |||||||| |||| |   ||||        |||  |   |    | |||| |   |            |  ||    |   |  |   ||    | ||   |    ||   | ||  |||| 
TCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtgtttg-tgtatgtgttgatccttttttttctagtttgctagctctgtttgtgaaatactaaaaccactttttctttgttgacctatgagatc-

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA13G06730.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccat--ccatcaaacccacatcacatcacacttcaatttcgc-aagcttaattagccaccctttcgattggatct
||||||| || || ||||| || || ||||| || || ||||| ||||||||||||||||| | |||||||||||| || || ||||| |||||| | ||||   | | ||||  |   |  | ||||   |  |  ||| |  || || | |   |   | | |||| | || |||  ||    |   ||  |  || ||  
TCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgttatttt-tgtttgttttaattatttgcactcataatcatataaaaattcgaatgagtttctctaatctttgttttatatatttaagtgtgaat--

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G28140.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcattt-cat---ttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct
| ||||| || |||||||| ||||| || || || |||||||| || |||||||||||||||||  | || || || ||||||||||||||||     ||||  || |  ||   |   ||   ||   |||  |  ||    || ||||  | |  | |  | ||   | |   |||  |||      ||| |  ||  |   
TGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatatatagatatatattcaccaaaatgtaaacaaattacacacaaaaaaataaaaataaaaccctctttcttg-ttattttttcttgcttttaaa---

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G27670.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctag--ctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct-
||||||| || || ||||| || || ||||| || || ||||| ||||||||||||||||||||||| |||||||| || |||||||| |||| |   ||||        | |  |    ||  | |  ||  |   |            | |    |  ||| |||  |    ||  | | | |     || | | | ||  
TCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtgtgtgttgatcctttttttttctgtttcttctctttgtgagatactgaaaatcactttttc---tttgttgacctatgagatctacttgctcca

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA19G04320.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccaca-tcacatcacacttcaatttcgcaagcttaattagccaccctttcga--ttggatct---
||||||| || || ||||| || || ||||| || || ||||| ||||||||||||||||||| ||| |||||||| || || |||||||||||| | ||||   | |  |||  |   |  | ||||  ||   |   || || | ||| || | |    ||||     || ||   ||  |    ||| |   |  | | |   
TCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTTTATGAATTCTGCAGCACCAACAGgtatgtgttgtttt-tctttgttttaatt-attatttgcactcataatcatataaaa----aattgaatgagtttctctaatctttgttttgtgttcaggtatatg

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct------
|||||||||| || || ||||| |||||||| || || ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||   ||| ||||   |  |||  || |  ||| |  ||| | |  |           ||||    ||||   | |   ||    |||         | |     |  | |      
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatctcccatagccaaattacac--atcaagcttttttgttagtgacaca----acttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G11120.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattag--ccaccctttcgattggatct-
| ||||| || |||||||| ||||| || || || |||||||| || |||||||||||||||||  | || || || ||||||||||||||||     ||||  || |   |   ||  || ||  | | |    | || |  |   |||   | |    |||  |  ||   ||| ||   ||  | ||   |||   | | 
TGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatatatagatatatattc--accaaaatgttaa-caaattacacgaaaaaacgaaataacaaaaaaataaataaaaccctctttcttattatttttg

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT5G15800.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttc--gattggatct
| ||||| || || ||  | || || ||||| || || || || || |||||||||||||||||||| || |||||||| ||||| |||||| ||   | ||  |   |  |  |   ||     | |   |  ||  |         | |||  |  | |  |       || ||  |       | |   |||   |   
TGAAGAAAGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaacaactctctcactctttatcagtttcttgattgagtttttgctagatctgagcttagatctttgt-ctcaaggacttgttatatatagatcacacg-

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT3G02310.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct-------
| || || || || ||||| || || |||||||| || || ||| | |||||| ||||||||||||| |||||||||||||||||||||||||||   | || | | || ||   ||   ||| || |  |||  |       | |||         |  | | | |  |   | | |     |  | | |||||  | |       
TGAAAAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTCTGCAGCACCTCCAAgtacttctctttctttatacact-tattagatctgt---gtgtagatctttcatttttctagtcttgtga---tgagttttatctttcttgattgctttttaacaaa

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT2G03710.3 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttca----tttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct
|||||||||| || ||||| || ||||| || || || ||| | || ||  |||| ||||| ||||| |||||||||||||| |||||||||| ||  ||||  |     || | |   |      |||| |   ||| |||||    |   | ||     | || | |       || |||    |   ||   |  |||| |
TCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGCCCTAGgtgaaaactctttaatctttgatatatctactttttccctcaaagtttc--tatattttgatcca-tgttagggttttgattcttaaggattataaa-ggatat

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv14s0083g01050.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgt--tcatttcatttcctagctactctaatccatccat---caaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct
||||||| || || |||||||| ||||| || || || |||||||| |||||||||||||||| ||| || |||||||| ||||||||||||| |   ||||  ||  ||   |||||   | |    ||| |  |||   || |  | |||  | ||| |  |    |  |   | ||  ||         || | |||  |  
TCAAGAAAGCTTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTCGCTCTCATCATCTTCTCCACCCGTGGAAAGCTCTATGAGTTCTGCAGCAGCTCAAGgtcctctctttgattcctcttttcctatatctacgcatattcacaaacgcatgtcttcata--ttggatctgtttgatttcttgatt--ttatttggttgattt-

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv01s0011g00110.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct-----
| |||||||| || ||||| || ||  | || || || ||||| || |||||||| ||||||||||| |||||||| || ||||||||||||  |   ||||  ||||| ||  ||| |   |||  |  |||      | | | | ||| | |||  || || |      | |  ||  |  || |       || | |     
TGAAGAAGGCCTATGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCGCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCGGCTCTAGgtatatttctttctctatcctttct--tttatctcatctatctata-cac-ttacatgtctatct-atgtacatgcttgtctgccatgaacgcgggtttttttct

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv01s0010g03900.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacat-cacacttcaatttcgcaagcttaattagccaccctttcgattggatct--------
|||||||||||||||| || || || ||||||||||||||||| || |||||||||||||||||  | || || ||||||||||||||||| | |  |||||       ||  |  ||  |    ||   |   |  ||||| | ||   || || ||||   ||||  ||    ||  |   | |      |  |||  |        
TCAAGAAGGCGTACGAACTTTCGGTGCTCTGCGACGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgta------ataacacaggaaaagaaa---aagtagaaaacctaaatttgatacaaacttgcttttcataacacaaaacacaaagcaagagaaaaggaaattgttctct

upper sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv17s0000g05000.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatc-acacttcaatttcgcaagcttaattagccaccctttcgattggatct--
||||||| || || |||||||| || ||||| ||||| ||||| || |||||| | ||||| | ||| ||||| ||||| ||||||||||||  ||  ||||   |||| | || |   | | ||   |  | |     |    | |||| || |  | |    |     | | ||  |    | ||||    |    |    
TCAAGAAAGCTTATGAGCTCTCTGTTCTCTGTGACGCTGAGGTTGCTCTCATCGTTTTCTCTAGCCGTGGCAAACTCTATGAGTTCTGCAGCGGCCCTAGgtat-tttcttctcttcatttccctctcctttgctcttgatttgcttcacctctatgccttggatct--taccctatctgtaaagccttctagtcttgttgct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88592982|gb|CI711128.1|CI711128
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88401388|gb|CI585944.1|CI585944
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88722826|gb|CI746336.1|CI746336
EST:     ATCATCTTCTCCAACCGCGGNAAGCTCTACGAGTTCTGGAGCACCCAGAG                         CATGAGTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|58663584|gb|CK052270.1|CK052270
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88720377|gb|CI743676.1|CI743676
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88694062|gb|CI738100.1|CI738100
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGANTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88721563|gb|CI744862.1|CI744862
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTANGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88696368|gb|CI739943.1|CI739943
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88984144|gb|CI723700.1|CI723700
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAANGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88694250|gb|CI738288.1|CI738288
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88355319|gb|CI679024.1|CI679024
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|58601238|gb|CK011766.1|CK011766
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGAC
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGAC
EST: gi|88722944|gb|CI746454.1|CI746454
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88725198|gb|CI748457.1|CI748457
EST:     ATCATCTTCTCCAACCGCGGNAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|40491399|gb|BX901494.1|BX901494
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88719988|gb|CI745287.1|CI745287
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88671413|gb|CI725529.1|CI725529
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88694823|gb|CI738861.1|CI738861
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|163926627|gb|EG713643.1|EG713643
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|58685642|gb|CK074329.1|CK074329
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCA
EST: gi|88687916|gb|CI731492.1|CI731492
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88724225|gb|CI747484.1|CI747484
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|24208827|gb|AU225854.1|AU225854
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88722014|gb|CI745417.1|CI745417
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88461647|gb|CI695489.1|CI695489
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88730563|gb|CI754176.1|CI754176
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88726869|gb|CI750524.1|CI750524
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTAGCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88718586|gb|CI742096.1|CI742096
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88904617|gb|CI711916.1|CI711916
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88718424|gb|CI741934.1|CI741934
EST:     ATCATCTTCTCCAACCGNGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88581317|gb|CI698295.1|CI698295
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88720603|gb|CI743902.1|CI743902
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAANGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|66932169|gb|CX119017.1|CX119017
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88313445|gb|CI671563.1|CI671563
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88728398|gb|CI751908.1|CI751908
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88338971|gb|CI677788.1|CI677788
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88581413|gb|CI698397.1|CI698397
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: gi|88695657|gb|CI737695.1|CI737695
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG                         CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 69 (downstream exon)
Score: 121

TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAAACAGCTGTCCAAAATAGAGAAAGTGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaccc