1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCACCGCCGCCTGCGCCGATCCCCATCCATCCCTCCAGCGAGCAGGGCGGGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacatcctccgccaccgccgcctgcgcctgcgccgatcctcatccatagcgcgagcgagcgttcctcctgctgcttccaccgcatccgttacgca...
species | Oryza sativa |
transcript | LOC_Os08g37800.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88391753|gb|CI603272.1|CI603272
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88406606|gb|CI599099.1|CI599099
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29635870|gb|CB640879.1|CB640879
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTEST: gi|117217399|gb|CT861615.1|CT861615
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACT
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88350592|gb|CI630110.1|CI630110
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: CGCCGCT-GTTCCTCCTGCTGCTTCCGCCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29635717|gb|CB640726.1|CB640726
genomic: CGCCG-TCGTTCCTCCTGCTGCTTCCG-CCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88398509|gb|CI595910.1|CI595910
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|29624484|gb|CB629495.1|CB629495
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|88399225|gb|CI618415.1|CI618415
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGAEST: gi|58668090|gb|CK056776.1|CK056776
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
EST: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTG TGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
genomic: GGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacat ... atattgccagTGAAAATGGAAGGAAATGCTAGAGGCGGTGGGCATTCTGAGGCACTGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCACCGCCGCCTGCGCCGATCCCCATCCATCCCTCCAGCGAGCAGGGCGGGCGCCGTCGTTCCTCCTGCTGCTTCCGCCCGCATCCATCCTGGTCACTGgtgagcacatcctccgccaccgccgcctgcgcctgcgccgatcctcatccatagcgcgagcgagcgttcctcctgctgcttccaccgcatccgttacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc