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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCgtacgcactcctccccctcttcgaacccccttctccttggtgtcgtactaccaaaccctaactcctcctcctcctgctccgctcgtctcag

Basic information

species Oryza sativa
transcript LOC_Os08g37480.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g37480.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G153766_T01 (Zea mays), 5'ss of exon 1
GGCAGCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCgtacgcactcctccccctcttcgaacccccttctccttggtgtcgtactaccaaaccctaactcctcctcctcctgctccgctcgtctcag
||| ||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||| ||||| ||| || |||||||||||||||| || ||| |  |     || |  |||  |||| |   ||         | |  ||    | ||||| |   |||    |||   | |        
GGCGGCCGCGGTGCAGAAGCAGAAGTCGCTGCTGCAGAAGGCGGACGCCGACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGAgtatgtccgtgcgcctccgttc--accctcgaatctggcagcctgaagcactccgcactaaccctagctcggaatgccatggttag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5455511|gb|AU075677.1|AU075677
EST:     ACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGC                         GTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATG
genomic: ACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCgtacgcactc ... ctcgtctcagGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATG