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AGGAGCCCGCCGAGACGATCTCCTCCGCCGAGCAGCGCCGATCTCCCCTCCCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatccccgtacgtacgcgcatccccttcctcatccctctccacccacgccttctctctacgcggctatgccttaacccttagcttctccttctag...
species | Oryza sativa |
transcript | LOC_Os08g36994.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88432599|gb|CI567638.1|CI567638
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88298560|gb|CI563555.1|CI563555
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88423107|gb|CI613408.1|CI613408
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG GTTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88717019|gb|CI740529.1|CI740529
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88407200|gb|CI581287.1|CI581287
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|117227378|gb|CT846566.1|CT846566
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88350670|gb|CI617525.1|CI617525
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88718278|gb|CI741367.1|CI741367
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88403432|gb|CI573155.1|CI573155
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88346534|gb|CI622991.1|CI622991
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88399316|gb|CI618506.1|CI618506
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG GTTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88422593|gb|CI571575.1|CI571575
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88573870|gb|CI665639.1|CI665639
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88392450|gb|CI612924.1|CI612924
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88415381|gb|CI586587.1|CI586587
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88316708|gb|CI624150.1|CI624150
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88311485|gb|CI572541.1|CI572541
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88398641|gb|CI598606.1|CI598606
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCANNNNNNNCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88402931|gb|CI568705.1|CI568705
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88362823|gb|CI614179.1|CI614179
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: CCGCGAGCAGCGGGGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCG ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
genomic: CCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatcc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGCCCGCCGAGACGATCTCCTCCGCCGAGCAGCGCCGATCTCCCCTCCCGCGAGCAGCGGCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGgtgagcatccccgtacgtacgcgcatccccttcctcatccctctccacccacgccttctctctacgcggctatgccttaacccttagcttctccttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc