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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGACGCCGCGGTGGCCGAGGCTGTGTTGGATTCGTGCAGGGTGTTGCTGCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAGgcatgctacataatgaaagcgtagaattcttatcttttgtatatagtggaaaagtgcggagccacagttctttcatgctactgatcaatacgatatcgaa...

Basic information

species Oryza sativa
transcript LOC_Os08g33850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G152457_T01 (Zea mays), 5'ss of exon 1
CTCGACGCCGCGGTGGCCGAGGCTGTGTTGGATTCGTGCAGGGTGTTGCTGCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAGgcatgctacataatgaaagcgta-gaattcttatcttttgta------tatagtggaaaagtgcggagccacagttctttcatgctactgatcaatacgatatcgaa-
|||||  |||| ||||||||| |  |  || | || |||||||   |||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||  ||||| | |||  ||  || || || ||  || |       |    |||||| ||| ||| |   || |||| |||        |  ||  |||   | | 
CTCGATTCCGCAGTGGCCGAGTCCATCCTGCAGTCTTGCAGGGAAGTGCTTCGGGGGTCGGGGTTCCAATTTCAGGACGAATGGGCCACCGTGATCTCAGgcatgtaacatagtaaaactgtgtgacttattttccgttttgatgacttgctttggaaatgtgtggatctggagctcttgcat--------ttgatgtgatgctggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66923290|gb|CX110138.1|CX110138
EST:     GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAG                         GAGCTGAGGAAGGGATGTATGCATGGATTGCGGCAAATTATGCGCTGGGTA
genomic: GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAGgcatgctaca ... tttcgtgcagGAGCTGAGGAAGGGATGTATGCATGGATTGCAGCAAATTATGCGCTGGGTA
EST: gi|58592981|gb|CF991289.1|CF991289
EST:     GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAG                         GAGCTGAGGAAGGGATGTATGCATGGATTGCGGCAAATTATGCGCTGGGTA
genomic: GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAGgcatgctaca ... tttcgtgcagGAGCTGAGGAAGGGATGTATGCATGGATTGCAGCAAATTATGCGCTGGGTA
EST: gi|58691243|gb|CK079930.1|CK079930
EST:     GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAG                         GAGCTGAGGAAGGGATGTATGCATGGATTGCGGCAAATTATGCGCTGGGTA
genomic: GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAGgcatgctaca ... tttcgtgcagGAGCTGAGGAAGGGATGTATGCATGGATTGCAGCAAATTATGCGCTGGGTA
EST: gi|58691215|gb|CK079902.1|CK079902
EST:     GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAG                         GAGCTGAGGAAGGGATGTATGCATGGATTGCGGCAAATTATGCGCTGGGTA
genomic: GCGGGGATCGGGGTTCCAGTTCCAGGACGATTGGGCCACCGTGATCTCAGgcatgctaca ... tttcgtgcagGAGCTGAGGAAGGGATGTATGCATGGATTGCAGCAAATTATGCGCTGGGTA