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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccctgcccccgccatctgatcgattacggatttacggctgcgtgtgcgatcgtc...

Basic information

species Oryza sativa
transcript LOC_Os08g33830.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G082174_T02 (Zea mays), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccctgcccccgccatctg-atcgattacggatttacggctgcgtgtgcgatcgtc---------
||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||      ||||| | |||  | | | ||| |  | ||| |  |   |    ||  ||| | | |||||   |   |    |||| |||  |   | |         
CACCGAGGAGGAGCTCGTCGACCTCTGCAAACCCTTCGGCCGGGTCGTAAACACCATGTGCAACGTCGGCGCTAACCGCAACCAGGCATTCGTCGAGTTTgtaag------cccctgctctctgctcaactccccgtttctcggatc---gattgcgatatcggtagcgatttgcgccctgtttctgc-tgtaaggatgactgagattac

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccctgcccccgccatc--tgatcgattacggatt-tacggctgcgtgtgcgatcgtc---
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||      ||||| | | |  | ||| | |  ||| ||| |  |  |      | |      |||       || || |   |    |  || |||       
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAACCCTTCGGCAGGGTCGTAAACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTTgtaag------cccctgctccctgctcgacttcctccttctcggatcgattgtgatgtcggtagcgatttgcggtggcttctgtagagatgactgagattacgagg

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA09G37080.1 (Glycine max), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggac-actcccctcccctccccccgattcctccc--tcctccgccccctgcccccgccatctgatcgattacggatttacggctgcgtgtgcgatcgtc
| |||| ||||| |||   ||||||||||| |||||||| | | || ||||||||| |||||| ||||||||||| ||||||||||| || ||||| |||||||| || |   ||||| |  |   || |||| |  |  | || | |    |         | |||     ||   |||| |||      |  ||  |    
CTCCGAAGAGGAACTCAGAGAGCTCTGCAAACCCTTCGGTAAGATCATCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTCGAATTCgtaagtactaactccctctctcctttcctattcttttcaattcttccctttttagggtttttagctgtgtatttgttgattcacgagaaattcagctcta---

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA18G49580.1 (Glycine max), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccctgcccccgccatctgatcgattacggatttacggctgcg-tgtgcgat-cgtc
  ||||||||||||||   ||||||||||  |||||||| | | |||||||||||| |||||| ||||||||||| ||||||||||| || ||||| |||||||| |    ||  |||  | |     |||||| |||  |               ||| | |  | | |||   ||       |  | | ||  |  | | 
-TCCGAGGAGGAGCTCAGAGAGCTCTGCAGACCCTTCGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTCGAATTCGtaagtaactccctttcctattcttttcattccttccttattttttagggtttttagccgtgtatttgtttattcatgagaaatttagctctgttacacat-

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccct-gcccccgccatctgatcgattacggatttacggctgcgtgtgcgatcgtc----
|  ||| ||||||||| |||| || ||||| |  ||||||| | ||||||| |||| | |||| ||||||||||| ||||| || || |||||||| || || ||   | |         |      | |    |  ||| ||     || || ||||  || || |  |  |  |  | | |   |    ||  || |      
CGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATTCGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTgtgagcttaattgaa---attgtttttgttcttacagtcccccaatttctagctcccgggatttggtttaggaaaggataaaga--gaaattggaattgcagcgc

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccctgccccc-gccatctgatcgattacgg-atttacggctgcgtgtgcgatcgtc
||||||||||||||| || |||||||| || |||||||||| | |||||||||||| |||||| ||||||||||| ||||||||||||||||| || ||||| ||  | | |||||    |    |   ||| |||     |  ||   ||   |  |  || |  ||  |||    ||| |  |  |  | | | |     
CACCGAGGAGGAGCTTGTGGAGCTCTGTAAACCCTTCGGCAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCCTTCGTGGAATTCgtgagtcccccccccttttttttttct--ttcttccgattccatccgtttgtttcaagatatatcttcatttattttattgaaaggggtttcttctagaaag

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S81_184V6.1 (Physcomitrella patens), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccct---ccccccgattcctccctcctc-cgccccctgcccccgccatc--tgatcgattacggatttacggctgcgtgtgcgatcgtc
|| ||||||||||||| ||||||| |||||||||||||||| ||| |||||||||| |  ||| ||||| ||||||| ||||||||| ||||| |||||||| || |  || ||   |||    | | | | ||| |  ||  |   |   ||||     |    |  ||||| || |      |  || ||  |  ||       
CAGCGAGGAGGAGCTCATCGAGCTGTGCAAGCCCTTCGGCAAGGTGGTCAACACCAAGGTCAATGTCGGGGCCAACCACAACCAGGCGTTCGTGGAGTTCgtgagtattcttcctatcccagcgctctcgggttcgtttcttgttgtggtgcctgttagggttcgcagtgatctataattatgatgtggttggattcgct------

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S326_1V6.1 (Physcomitrella patens), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccc-cccgattcctccctcctccgccccctgcccccgccatctgatcgattacggatttacggctg-cgtgtgcgatcgtc
|| ||||||||||||| | ||||| |||||||| |||||||  || |||||||||| |  ||| ||||| || || | |||||| || || || ||||| || ||  | || || || ||| |  |   | |  |          ||   |          |   | ||  |    |||| || ||  | ||| |    |  
CAGCGAGGAGGAGCTCATTGAGCTGTGCAAGCCGTTCGGCAAAGTGGTCAACACCAAGGTCAATGTCGGGGCTAATCACAACCAAGCGTTTGTGGAGTTTgtgagttctctgccttctcctgctgctttaattttgatagaatttcctttttttttttttgtggaagcg--tgttaatttgcgtctttcttgttctggtgct

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ22628 (Selaginella moellendorffii), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccc-cccgattcctccctcctccgccccctgcccccgccatctgatcgattacggatttacggctgcgtgtgcgatcgtc
 ||||||||||||||| |||| || ||||||   || |||| ||||||||| ||||  ||||| || ||  ||||||| |||||||| ||||| || ||||||||  | |  || | ||||    |  | ||         |  |     |  |   |  || |  ||    |  |   |     ||| ||   | |  | 
TACCGAGGAGGAGCTCATCGAACTGTGCAAGATGTTTGGCAAGGTCGTCAATACCAAATGCAATGTGGGAACCAACCGGAACCAGGCATTCGTGGAATTCgtaagctcgcctccattcccttttgcttggtttgctttgtttttggattttttcttggagattttttcctccagcgccatg-aattgcttgcttggttttg

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ11787 (Selaginella moellendorffii), 5'ss of exon 1
CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccc-cccgattcctccctcctccgccccctgcccccgccatctgatcgattacggatttacggctgcgtgtgcgatcgtc
 ||||||||||||||| |||| || ||||||   || |||| ||||||||| ||||  ||||| || ||  ||||||| |||||||| ||||| || ||||||||  | |  || | ||||    |  | ||         | ||     |  |   |  || |  |   |   | |        ||| ||   | |  | 
TACCGAGGAGGAGCTCATCGAACTGTGCAAGATGTTTGGCAAGGTCGTCAATACCAAATGCAATGTGGGAACCAACCGGAACCAGGCATTCGTGGAATTCgtaagctcgcctccattcccttttgcttggtttgctttgttttcggattttttcttggagatttttttcctccagcaccatgaattgcttgcttggtttt-