Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCCTCCTCCACCTCCCAAAACCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCTCCGGCACCAACAAGgtcgtacgaggtaacgtgcctccccgtcctctgatctcccgggttcttgatttccctcgggcgagagagaaagaaaaaaaatctgaggggggcaagcaatgtgctgttgtttggtgggattggagcag

Basic information

species Oryza sativa
transcript LOC_Os08g32620.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32620.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G871463_T02 (Zea mays), 5'ss of exon 1
CCCCCTCCTCCACCTCCCAAAACCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCTCCGGCACCAACAAGgtcgtacgaggtaacgtgcctccccgtcctctgatctcccgggttcttgatttccctcgggcgagagagaaagaaa----aaaaatctgaggggggcaagcaatgtgctgttgtttggtgggattggagcag
            ||  ||| | |||||| ||   | |||||| ||||| |||||||| ||   |||||| || || |||||||||  ||||||||||||||||||    |||||      ||||    | | |||||    |  |||   || |||  | | |  |    | |       |||  |||| |  ||| |                                  
----------ACCCCTCCATATCCTCGCTCCACGGTCATGGCGAAGACGAAGCAGGGAAATAAGGACGTGGATTCGTACACCATCGGCGGCACCAACAAGGTCGTCTATGgtaat----ttcccgcatccccgatctggttgtatctgttttccccgtgagaggtatctgatgctgctgcaaatgtctgtgccgggaag---------------------------------