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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTCCCAAAACCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCTCCGGCACCAACAAGGTCGTACGAGgtaacgtgcctccccgtcctctgatctcccgggttcttgatttccctcgggcgagagagaaagaaaaaaaatctgaggggggcaagcaatgtgctgttgtttggtgggattggagcag

Basic information

species Oryza sativa
transcript LOC_Os08g32620.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32620.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G871463_T02 (Zea mays), 5'ss of exon 1
CACCTCCCAAAACCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCTCCGGCACCAACAAGGTCGTACGAGgtaacgtgcctccccgtcctctgatctcccgggttcttgatttccctcgggcgagagagaaagaaa----aaaaatctgaggggggcaagcaatgtgctgttgtttggtgggattggagcag
  ||  ||| | |||||| ||   | |||||| ||||| |||||||| ||   |||||| || || |||||||||  ||||||||||||||||||    |||||      ||||    | | |||||    |  |||   || |||  | | |  |    | |       |||  |||| |  ||| |                                  
ACCCCTCCATATCCTCGCTCCACGGTCATGGCGAAGACGAAGCAGGGAAATAAGGACGTGGATTCGTACACCATCGGCGGCACCAACAAGGTCGTCTATGgtaat----ttcccgcatccccgatctggttgtatctgttttccccgtgagaggtatctgatgctgctgcaaatgtctgtgccgggaag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682129|gb|CK070816.1|CK070816
EST:     CGGGACGTCGACTCCTACACCATCTCCGGCACCAACAATGTCGTACTGAG                         TGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCGTAC
genomic: CGGGACGTCGACTCCTACACCATCTCCGGCACCAACAAGGTCGTAC-GAGgtaacgtgcc ... attggagcagTGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCGTAC