1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCGGTCGTCCACGCGCACCCAGATCCCAGCCGGCAGGCTGTCGCTGAATATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacacacagaccagatccccctaaaccctcgatcgaattcttttccatctcgcacgaacgtgtgactcggatttggatccaggcttgcttactccatcgttagccccattcgaccaccctaatgtatttgtctctaacaagttcag
species | Oryza sativa |
transcript | LOC_Os08g29669.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCGEST: gi|88695248|gb|CI739286.1|CI739286
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
EST: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCGEST: gi|55414457|gb|CV726833.1|CV726833
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
EST: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCGEST: gi|88315535|gb|CI615407.1|CI615407
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
EST: ATCCCCGCAGCTAACCCTGGTTGGTGAATCCGGCGAGCAACAAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCGEST: gi|29684805|gb|CB681080.1|CB681080
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
EST: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCGEST: gi|88575459|gb|CI669604.1|CI669604
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
EST: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCGEST: gi|88313090|gb|CI592374.1|CI592374
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
EST: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCG TGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
genomic: ATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacac ... acaagttcagTGTAAGCGCGGAGGATCGGGATGGAGATTATTGTCATTCTCTCGCTTGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGTCGTCCACGCGCACCCAGATCCCAGCCGGCAGGCTGTCGCTGAATATCCCCGCAGCTAACCCTGCTTGGTGAATCCGGCGAGCAACCAGAGATCGgtgaggacacacagaccagatccccctaaaccctcgatcgaattcttttccatctcgcacgaacgtgtgactcggatttggatccaggcttgcttactccatcgttagccccattcgaccaccctaatgtatttgtctctaacaagttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC