1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCCCCACCTGCTGCTGCTGCCGCCGCCCCTCGCTGCGTCCTTCCGCGGGTCGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAGgtgagcgaagcttcttgcgattctttccttttagttgcgcgagcgggatggcttgggtgcctgcattggtgggagccggatggatgggtttggggtggat...
species | Oryza sativa |
transcript | LOC_Os08g29370.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGCCGCGGCCGTCACCCCGGCACCCGCTGCGCGCTCCCCTCCTCCGAG AAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCTEST: gi|29643946|gb|CB648953.1|CB648953
genomic: GTCGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAGgtgagcgaag ... attcttgcagAAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCT
EST: GTCGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAG AAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCTEST: gi|58612068|gb|CK039780.1|CK039780
genomic: GTCGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAGgtgagcgaag ... attcttgcagAAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCT
EST: TCTGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAG AAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCTEST: gi|29622078|gb|CB627089.1|CB627089
genomic: TC-GCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAGgtgagcgaag ... attcttgcagAAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCT
EST: GTCGCCGCGGACGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAG AAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCT
genomic: GTCGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAGgtgagcgaag ... attcttgcagAAGAATTCATTTAGCTGGAAAGAATATGCAATTTCTGTAGCATTATCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCCCACCTGCTGCTGCTGCCGCCGCCCCTCGCTGCGTCCTTCCGCGGGTCGCCGCGGCCGTCGCCCCGTCGCCCGCTGCGCGCTCCCCTCCTCCGAGgtgagcgaagcttcttgcgattctttccttttagttgcgcgagcgggatggcttgggtgcctgcattggtgggagccggatggatgggtttggggtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC