Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt...

Basic information

species Oryza sativa
transcript LOC_Os08g27850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G101480_T01 (Zea mays), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttg-aatcgaaggggttctttt
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  ||  | |        |         ||   ||    ||  |||    ||   || |  ||||  | || |    |||| |  | |   || | |   
GTTGTGCGGAAGAAGGCACCCACCGCCGCTGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggttcgtaggtttcggttggtatcttaactcgatttgggatcctttttcttttgggtttcgatttcatccattttgcagcccagccggctgtgc-

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G800112_T01 (Zea mays), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtact-------actgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||| |||||||||||||||  ||  |       | |       | |||||| |  || |  || |   | | |  |    ||||  ||||  | || |    |||| | |  ||  |       
GTTGTGCGGAAGAAGGCACCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtttcatagattttggttgctaccccccctaactcgattttggaggtcttttatctttcgggtttcgat-tcatccgttttgcagcacagccgg------

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA06G42900.1 (Glycine max), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtact-actgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt-
||  | || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| | || || ||| | | |  |   ||  | ||      ||      || ||||||  | |  |    ||   | |    |||    |||||    |    ||| || ||   
GTCCTCCGCAAGAAGGCTCCCACTGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttcccaaaaccctcaccgattgatcaatttattgtcttttcttcttttgtttttaaatataggatctgaacttctt--gtttcttgggattattgca

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt--
||  | || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||| | || |||||| |||  | |     ||| ||  |      |   |  |  |     ||       ||     |  | | |   ||   ||  |   |   | ||||| |  
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgt--tccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA12G15420.1 (Glycine max), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt--
||  | || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || || || ||| | || |||||| |||  | |     ||| || |       | | | |  |    ||| || | | |   | |  |    |  || |||   ||    |    |  | |   
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgt--tcccaaaaccctcatcgaaaaaaaacatataataaatattcgaatagttgttcgtcgcgtgttgattatctgacaaatataaatttcttctcac

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA12G15410.1 (Glycine max), 5'ss of exon 1
------------------------------GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt
                              ||  | || |||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||   |||| |||   || ||| | ||| | || |||| |  ||  | |     |||  | |   |    |  ||   | |||  || |  |||                                            
GGCCCTCTTTCTCTGGATTGGGAACCCGTCGTCCTCCGCAAGAAGGCTCCCACCGCTGCCGCTAAGAAGGACGAGAAAGCCgtcaacgccgcccaatgctctggc-ttgaaatcaaaaccctaaaaaagtatttgt--tgccaaaaccctaatcgaattgatcagttaattgttgtcttca--cga--------------------------------------------

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv19s0014g01260.t01 (Vitis vinifera), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt-------
||| | ||||||||| | | || |||||||||||||||||| ||||| ||||||||||||||||| |||   |||||||||||||||||  | |||||||||      | |  | | | |   |    || |   ||||   ||| |||  |||||     | ||        |    |  ||||||||     | ||||       
GTGATCCGGAAGAAGCCTCTCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgta-----ttcccctttctctttctttccccattttttttcgttgttttt-ttcgaagaaatctttggaggg-tagaatgagaatcgaaaaatattttttattttcc

upper sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatt-tgattcgattcgcttttccctctcc---ttttctttgaatcgaaggggttctttt
||| | ||||||||| | |  | ||| |||||||||||||| ||||| || |||||||| || || |||  ||||||||||||||| ||| | |  || |||  |   |  || ||  |           | ||| | | |  || || |  |||||     |  | ||  |     || ||  |||    |   |  |     
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaagtacttcccttgaaaattatccctgagaaaagccgagtt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86601227|gb|CI251601.1|CI251601
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACTATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|11610342|gb|AU166018.1|AU166018
EST:     GTCAAACGCCGCCCGCCGNTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: GTC-AACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|58586739|gb|CF985047.1|CF985047
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|89198956|gb|CI253030.1|CI253030
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|11565080|gb|AU165716.1|AU165716
EST:     CGTCAACGCCGCCCGCCGNTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|38472253|gb|CF956384.1|CF956384
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|55411622|gb|CV723998.1|CV723998
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88979681|gb|CI026041.1|CI026041
EST:     CCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86254981|gb|CI017101.1|CI017101
EST:     AGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: AGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|218496704|gb|FG954265.1|FG954265
EST:     CGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88987644|gb|CI034519.1|CI034519
EST:     CGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|3762512|gb|AU029264.1|AU029264
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGNCCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86415763|gb|CI029774.1|CI029774
EST:     CGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|33814533|gb|CF333131.1|CF333131
EST:     CCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCCTCAACACC
genomic: CCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACAT-CCCTCAACACC
EST: gi|58692614|gb|CK081301.1|CK081301
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACGAACAAGGCGGCGTCAAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88360673|gb|CI647683.1|CI647683
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86853994|gb|CI251985.1|CI251985
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86416398|gb|CI030409.1|CI030409
EST:     CGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|58692057|gb|CK080744.1|CK080744
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|38476402|gb|CF960535.1|CF960535
EST:     CCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACGAACAAGGCGGCGTCAAGTGGCACATCCCTCAACACCA
genomic: CCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|218502357|gb|FG954996.1|FG954996
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86599388|gb|CI251346.1|CI251346
EST:     TCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAGCAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: TCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|58588661|gb|CF986969.1|CF986969
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAGGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88981494|gb|CI027112.1|CI027112
EST:     CATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88994862|gb|CI036443.1|CI036443
EST:     GCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: GCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88991546|gb|CI019724.1|CI019724
EST:     AGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAATGGCACATCCCTCAACACCA
genomic: AGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88335059|gb|CI641868.1|CI641868
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|30229491|gb|CB967382.1|CB967382
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88209992|gb|CI209841.1|CI209841
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86418447|gb|CI032656.1|CI032656
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|58687686|gb|CK076373.1|CK076373
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACGAACAAGGCGGCGTCAAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|38475393|gb|CF959526.1|CF959526
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACGAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|8856692|gb|AU094010.1|AU094010
EST:     GTCAACGCCCGCCCGCCGCTCCGGCGCCNAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: GTCAACG-CCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|89171977|gb|CI040487.1|CI040487
EST:     AGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGCCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: AGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|55415485|gb|CV727861.1|CV727861
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACNNNNNNNAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|87029255|gb|CI276523.1|CI276523
EST:     GCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: GCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|87019575|gb|CI282076.1|CI282076
EST:     CCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|218494429|gb|FG953432.1|FG953432
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86601787|gb|CI256292.1|CI256292
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGTGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88307263|gb|CI641900.1|CI641900
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|86899405|gb|CI298192.1|CI298192
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|58681229|gb|CK069916.1|CK069916
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88982305|gb|CI027880.1|CI027880
EST:     AGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: AGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|38479916|gb|CF964005.1|CF964005
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCGAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|569968|gb|D40817.1|D40817
EST:     CGTCAACGCCGCCCGCCGCTCCGG-GCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88339187|gb|CI633758.1|CI633758
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|88326492|gb|CI659926.1|CI659926
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|218496227|gb|FG950094.1|FG950094
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACGAACAAGGCGGCGTCAAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
EST: gi|163918623|gb|EG714865.1|EG714865
EST:     CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGT                         ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtacta ... ctatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT