1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGTCGGAGGACGACAAGCTGGTGGAGTACGACGCCCTCCTCCTCGACCGCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggtgctactctctctattcgatccccaatgactgattaaatctttttcatcatctgctactcctactctgctacctgcatgttcatgctccag...
species | Oryza sativa |
transcript | LOC_Os08g27840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCCEST: gi|88415219|gb|CI584042.1|CI584042
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCCEST: gi|88444053|gb|CI594426.1|CI594426
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCCEST: gi|88392609|gb|CI625431.1|CI625431
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: TTCCTCGACATCCTCCAGGCACCTCCACGGCGACGACCTCCGCGAGCCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCEST: gi|88370252|gb|CI585257.1|CI585257
genomic: TTCCTCGACATCCTCCAGG-ACCTCCACGGCGACGACCTCCGCGAGC-TGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCCEST: gi|88311907|gb|CI577513.1|CI577513
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCCEST: gi|88406457|gb|CI598950.1|CI598950
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCCEST: gi|116875630|gb|EC366138.1|EC366138
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGGAGCATGACTCCEST: gi|88389423|gb|CI600592.1|CI600592
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
EST: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTG GTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
genomic: GCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggt ... atatgtgtagGTCCAAGAATGCTATGAGATCGCTGCTGAGTATGAAGGGAAGCATGACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTCGGAGGACGACAAGCTGGTGGAGTACGACGCCCTCCTCCTCGACCGCTTCCTCGACATCCTCCAGGACCTCCACGGCGACGACCTCCGCGAGCTGgtatgctggtgctactctctctattcgatccccaatgactgattaaatctttttcatcatctgctactcctactctgctacctgcatgttcatgctccag
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