Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTCGCCGCCGCCTCTTCCTCTCTCTCTCCCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctcccgaaccctagctcgatccagcgactgctcggccgtgcggatctctgagcggtgtgtgtgtgtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os08g13690.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88763910|gb|CI773326.1|CI773326
EST:     GCAGTACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88729241|gb|CI752751.1|CI752751
EST:     TCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33662258|gb|CF293225.1|CF293225
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58599955|gb|CK010483.1|CK010483
EST:     CTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88730493|gb|CI754106.1|CI754106
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218500250|gb|FG946063.1|FG946063
EST:     CCCTCTCGATCTCGNTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CCCTCTCGATCTCG-TCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33656769|gb|CF279383.1|CF279383
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|8594819|gb|AU093357.1|AU093357
EST:     CCCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CCCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88762137|gb|CI771693.1|CI771693
EST:     GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33686974|gb|CF315213.1|CF315213
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218500236|gb|FG945125.1|FG945125
EST:     GCAGGACTCGATCGCG                         AT-GCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88344209|gb|CI655603.1|CI655603
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|29617930|gb|CB622942.1|CB622942
EST:     CTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|569496|gb|D40345.1|D40345
EST:     CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|11026050|gb|AU162651.1|AU162651
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33688839|gb|CF317078.1|CF317078
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33683489|gb|CF311728.1|CF311728
EST:     GGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAATGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|38476312|gb|CF960445.1|CF960445
EST:     CTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58681140|gb|CK069827.1|CK069827
EST:     CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88363002|gb|CI616159.1|CI616159
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33694126|gb|CF322365.1|CF322365
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88421570|gb|CI618694.1|CI618694
EST:     GCAGGACTCGATCGCG                         ATGGCGGGGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218479663|gb|FG949104.1|FG949104
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33805769|gb|CF328764.1|CF328764
EST:     GCAGGACTTGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58683169|gb|CK071856.1|CK071856
EST:     TCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88764957|gb|CI774075.1|CI774075
EST:     GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88377207|gb|CI600362.1|CI600362
EST:     GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|86830364|gb|CI290480.1|CI290480
EST:     TCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88762250|gb|CI771806.1|CI771806
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88421996|gb|CI611616.1|CI611616
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88696162|gb|CI739737.1|CI739737
EST:     TCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33655322|gb|CF277936.1|CF277936
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58604687|gb|CK015215.1|CK015215
EST:     CGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58667845|gb|CK056531.1|CK056531
EST:     CTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88729387|gb|CI752897.1|CI752897
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88333856|gb|CI645270.1|CI645270
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|5701687|gb|AU062820.2|AU062820
EST:     CTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218495485|gb|FG958236.1|FG958236
EST:     TCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88360470|gb|CI608396.1|CI608396
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218483201|gb|FG946355.1|FG946355
EST:     TCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58588918|gb|CF987226.1|CF987226
EST:     CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGT-G-G-A---GGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88314353|gb|CI604837.1|CI604837
EST:     CAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88338182|gb|CI677180.1|CI677180
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|117234791|gb|CT847888.1|CT847888
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88725900|gb|CI747412.1|CI747412
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218479242|gb|FG969145.1|FG969145
EST:     CTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|14191961|gb|AU184172.1|AU184172
EST:     CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58586741|gb|CF985049.1|CF985049
EST:     CTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGGGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33661533|gb|CF292500.1|CF292500
EST:     GTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88694232|gb|CI738270.1|CI738270
EST:     TCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|55828230|gb|AU068954.2|AU068954
EST:     CTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33809510|gb|CF330637.1|CF330637
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|427596|gb|D23729.1|D23729
EST:     CTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88736894|gb|CI760402.1|CI760402
EST:     GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|38477557|gb|CF961690.1|CF961690
EST:     CTCCCCTCTCGATCTCGT-TTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCCCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33659711|gb|CF282324.1|CF282324
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58677343|gb|CK066030.1|CK066030
EST:     CAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88395369|gb|CI611286.1|CI611286
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33822772|gb|CF337190.1|CF337190
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218502935|gb|FG945475.1|FG945475
EST:     CCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33692256|gb|CF320495.1|CF320495
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58695727|gb|CK084414.1|CK084414
EST:     TCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: TCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|58597895|gb|CK008423.1|CK008423
EST:     CTCGTCTTCTCTCTCTCGCGAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCGTCTTCTCTCTCTCGC-AGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|33656035|gb|CF278649.1|CF278649
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218491861|gb|FG947760.1|FG947760
EST:     CAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|88718877|gb|CI742387.1|CI742387
EST:     GCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: GCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|218485429|gb|FG969304.1|FG969304
EST:     CCTCTCGAATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CCTCTCG-ATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
EST: gi|568087|gb|D38922.1|D38922
EST:     CTCGCAGGACTCGATCGCG                         ATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG
genomic: CTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 64 (downstream exon)
Score: 42

CTCCTCGCCGCCGCCTCTTCCTCTCTCTCTCCCCTCTCGATCTCGTCTTCTCTCTCTCGCAGGACTCGATCGCGgtaagctccc ... gtgtgtgcagATGGCGGCGGAGGTGGCGAAGGCGGCGGTGGTGCCGGAGTCGGTGCTGAAGAAGCGGAAGCGGGAGGAGCAGTGGGCGGCGGACAGGAAGGAGAAGGCGC




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