1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCCATGGCGGGCGTGCAGAAGCCGGCCAAGCGGCTGGGGGGAATGGCGGAGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccgactcccgaatccccttcctcgcctcgctgattcgcctcttcgcgcgaatcctcgacctgttctggtttccggtttccgattgcggtttcg...
species | Oryza sativa |
transcript | LOC_Os08g10410.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCACCTCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|88307798|gb|CI644838.1|CI644838
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|88336875|gb|CI626955.1|CI626955
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAG GAGGATCAGGGCAGCTCACACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|86850743|gb|CI309555.1|CI309555
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|88372600|gb|CI610923.1|CI610923
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|88313765|gb|CI597396.1|CI597396
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|88344713|gb|CI624364.1|CI624364
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGEST: gi|5004222|gb|AU069371.1|AU069371
genomic: AGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGG
EST: GCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTTCCCCGCGCAG GAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAG
genomic: GCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCC-T-CCCGCGCAGgtggatcccg ... tttatggcagGAGGATCAGGGCAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCATGGCGGGCGTGCAGAAGCCGGCCAAGCGGCTGGGGGGAATGGCGGAGGCGCTCTCCATAGCCGCCGACCTCGGCTTCCCCGCCCCTCCCGCGCAGgtggatcccgactcccgaatccccttcctcgcctcgctgattcgcctcttcgcgcgaatcctcgacctgttctggtttccggtttccgattgcggtttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcgacc