1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCCTATCTCTTCTCGTCTTCCTCCGCTTCACGCCGCAAACAACCAACCAACCACTTCCTCCTCCTCCTCCTCCGCCGCCGCGATCCCCAATCCGATCTCgtaagtcttctccgcccctagctgtcgatcgatcgatagattattcgattatacgatcgccgaatttggtggtgttcttttttttttttttgggtctactcgtcgatctgagccgtgagggtttgttgcgagattggcgtgctgtgttgtggggtggtgttgattttttgtgtttgtttgcag
species | Oryza sativa |
transcript | LOC_Os08g09240.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|55436298|gb|CV731287.1|CV731287
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|58590250|gb|CF988558.1|CF988558
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: TCCTCCTCCTCCTCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|218487512|gb|FG953689.1|FG953689
genomic: TCCTCCTCCTCCGCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|25802781|gb|CA758742.1|CA758742
genomic: GCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|88721866|gb|CI743378.1|CI743378
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|88428393|gb|CI564861.1|CI564861
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTATTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|58695129|gb|CK083816.1|CK083816
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|88963125|gb|CI026798.1|CI026798
genomic: GCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: CGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|33671347|gb|CF299586.1|CF299586
genomic: CGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: ATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|58593892|gb|CF992200.1|CF992200
genomic: ATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: CGCGATCCCCAATCCGATCTG GGGAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|55431390|gb|CV728708.1|CV728708
genomic: CGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|218486561|gb|FG954049.1|FG954049
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|163926759|gb|EG715047.1|EG715047
genomic: GCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: AATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|33682438|gb|CF310677.1|CF310677
genomic: AATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|87012764|gb|CI295208.1|CI295208
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|88424094|gb|CI689796.1|CI689796
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCEST: gi|58599898|gb|CK010426.1|CK010426
genomic: GCCGCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
EST: GCCGCGATCCCCAATCCGATCTC GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
genomic: GCCGCGATCCCCAATCCGATCTCgtaagtcttc ... ttgtttgcagGAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTATCTCTTCTCGTCTTCCTCCGCTTCACGCCGCAAACAACCAACCAACCACTTCCTCCTCCTCCTCCTCCGCCGCCGCGATCCCCAATCCGATCTCgtaagtcttctccgcccctagctgtcgatcgatcgatagattattcgattatacgatcgccgaatttggtggtgttcttttttttttttttgggtctactcgtcgatctgagccgtgagggtttgttgcgagattggcgtgctgtgttgtggggtggtgttgattttttgtgtttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC