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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCGCCGGCGCTCGTCCTGCCGCCACCGCCGCGGCCGCCTGAGCCGATCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGgttagcacatcctccttcccatctctctctacccacgctctcactatatcgaatttgcgttaaccctagcttcttctgttctagaaattccttaatacta...

Basic information

species Oryza sativa
transcript LOC_Os08g07960.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88451540|gb|CI565593.1|CI565593
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|25799251|gb|CA755212.1|CA755212
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|29681300|gb|CB677575.1|CB677575
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|10794894|gb|AU108860.1|AU108860
EST:     TCCCATCCATCCCGCGAGCNAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|29615879|gb|CB620891.1|CB620891
EST:     TCCCATCCATGCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTG                         GTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAA
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGgttagcacat ... gaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAA
EST: gi|88394449|gb|CI605790.1|CI605790
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|33793654|gb|CF322711.1|CF322711
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|88417412|gb|CI579073.1|CI579073
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|88356897|gb|CI620785.1|CI620785
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|88394469|gb|CI605810.1|CI605810
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTG                         GTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAA
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGgttagcacat ... gaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAA
EST: gi|88399681|gb|CI583415.1|CI583415
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|33795033|gb|CF323392.1|CF323392
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|88397869|gb|CI583187.1|CI583187
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: gi|88417428|gb|CI579089.1|CI579089
EST:     TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG                    
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg