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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATCTTCTTCGAGGGCCAGCGCTCCGGCAAGCTCCCGCCCGGCAACCGCATGCCGTGGCGCGCCGACTCCGGCCTCACCGACGGCGCCCAGTACAATgtacgtacgccgcctctctctctttccctttcttccttgtctccggcgaggaggagtttgtgattccggcgtgtttgtgtttcag

Basic information

species Oryza sativa
transcript LOC_Os08g02220.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g02220.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G009025_T01 (Zea mays), 5'ss of exon 1
CATCATCTTCTTCGAGGGCCAGCGCTCCGGCAAGCTCCCGCCCGGCAACCGCATGCCGTGGCGCGCCGACTCCGGCCTCACCGACGGCGCCCAGTACAATgtacgtacgccgcctctctctctttccctt-tcttccttgtctccggcgaggaggagtttgtgattccggcgtgtttgtgtttcag---------------------------------------------------------------
 ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||| |||||||||||||| ||||||||||||| ||||||||   |    || |||  ||| | |  |  | |       |  |   ||| || ||| | |   ||   | |||    ||    |                                                               
AATCATCTACTTCGAGGGCCAGCGCTCCGGCAAGCTGCCGCCGGGCAACCGCATGGCCTGGCGCGGCGACTCCGGCCTCAGCGACGGCGCCCAGCACAATgta---ataatgcttctacctcctgctatagtgtatagaaacagcatggagtagtagtctcttgctcgcac-tgtccacgtccacgaaggcaccgatgggcgatggccacctcacctcgattgtacatctatatccggacggagtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487983|gb|FG959846.1|FG959846
EST:     GCATGCCGTGGCGCGCCGACTCCGGCCTCACCGACGGCGCCCAGTACAAT                         GTGGATTTGGTGGGCGGGTACTACGACGCCGGCGACAACGTCAAGTTCGGC
genomic: GCATGCCGTGGCGCGCCGACTCCGGCCTCACCGACGGCGCCCAGTACAATgtacgtacgc ... tgtgtttcagGTGGATTTGGTGGGCGGGTACTACGACGCCGGCGACAACGTCAAGTTCGGC