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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAAAAGAGAGAGAGAGAGAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgataccaaatcccgatttctcaacctgaatcccccccccacgttcctcgtttcaatctgttcgtctgcgaatcgaattctttgtttttttttctctaattttaccgggaattgtcgaattag

Basic information

species Oryza sativa
transcript LOC_Os07g47100.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58590002|gb|CF988310.1|CF988310
EST:     GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG                         GCGTTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: gi|88337157|gb|CI628243.1|CI628243
EST:     TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG                         GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: gi|88358188|gb|CI605113.1|CI605113
EST:     TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG                         GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: gi|88394573|gb|CI605914.1|CI605914
EST:     GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG                         GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: gi|86904058|gb|CI304492.1|CI304492
EST:     TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG                         GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: gi|88343544|gb|CI621912.1|CI621912
EST:     TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG                         GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAAAAGAGAGAGAGAGAGAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgataccaaatcccgatttctcaacctgaatcccccccccacgttcctcgtttcaatctgttcgtctgcgaatcgaattctttgtttttttttctctaattttaccgggaattgtcgaattag

- - - - - - - - - - AAGAGA