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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTGTTCGGCACGGCCGCGTCGGCGTACCAGGTGGAGGGCATGGCGAAGCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaatcagagattcagagtactaaacttcagtgcaggtgagatggtaaatggtgctcattgttgttaccgtgttcttgtgtcctgacag

Basic information

species Oryza sativa
transcript LOC_Os07g46280.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46280.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G148176_T01 (Zea mays), 5'ss of exon 1
TTCGTGTTCGGCACGGCCGCGTCGGCGTACCAGGTGGAGGGCATGGCGAAGCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaa--aagtaatcaga---gattcagagtactaaacttcagtgcagg-------------------tgagatggta-aatggtgctcattgttgttaccgtgttcttgt--gtcctgacag-------------
||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||| |||||||||||||| |||||||||   || |||||  |||    | ||   | |||||      || | |    || |                    |  | ||| |   |||  || ||  |||  |  || |||||||   ||| |  |              
TTCGTCTTCGGGACGGCCGCGTCGGCGTACCAGGTCGAGGGGATGGCCAAGCACGGCGGGCGGGGCCCCAGCATCTGGGACGCCTTCATAGAGGTTCCCGgtaagtaagccggccgaccaggttcagcaacacaaccatggccgccgccttcttcttcttccgattcttggttgggatggtggcactgatgtttgaaattgtcttcttgttgatccggggaatgaaaaaaacaag

upper sequence: LOC_Os07g46280.3 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv14s0006g01790.t01 (Vitis vinifera), 5'ss of exon 1
TTCGTGTTCGGCACGGCCGCGTCGGCGTACCAGGTGGAGGGCATGGCGAAGCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaatcagagattcagagtactaaactt-cagtgcaggtgagatggtaaatggtgctcattgttgttaccgtgttcttgtgtcctgacag
||| ||||||| |||||  |||||||||||||||||||||| ||| |  |  |||  ||| | || ||  |||| |||||| |||   |  | | ||| ||| | | |        | |  |  |   |  ||| |  | |   | |  |  |  |||   |||  || ||     | ||     ||     ||||
TTCTTGTTCGGAACGGCGTCGTCGGCGTACCAGGTGGAGGGAATGACCGATAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctc--tgatggatgagagtaaaaatggtggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88827210|gb|CI777775.1|CI777775
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88719088|gb|CI742598.1|CI742598
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|29642035|gb|CB647042.1|CB647042
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88349963|gb|CI634498.1|CI634498
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|29664412|gb|CB660687.1|CB660687
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88695207|gb|CI739245.1|CI739245
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCA
EST: gi|88722865|gb|CI746375.1|CI746375
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|33653413|gb|CF276027.1|CF276027
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88397812|gb|CI583130.1|CI583130
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88354186|gb|CI637752.1|CI637752
EST:     GCAGGGTGGCCGGGGCCCTACCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCC-TAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
EST: gi|88330839|gb|CI636851.1|CI636851
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|58673231|gb|CK061917.1|CK061917
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88349609|gb|CI632744.1|CI632744
EST:     GCAGGGTGGCCGGGGCCCTACCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88724796|gb|CI748055.1|CI748055
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88694088|gb|CI738126.1|CI738126
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|44664928|gb|CR278362.1|CR278362
EST:     GGACGCTTTCATAGCAGAAACCAGT                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
genomic: GGACGCTTTCATAG-AGAAACCAG-gtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
EST: gi|44664928|gb|CR278362.1|CR278362
EST:     GGACGCTTTCATAGCAGAAACCAGT                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
genomic: GGACGCTTTCATAG-AGAAACCAG-gtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT