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TGAGGCAAGAGAGAGAGAAAGCCATGGCGAGCGACGTGCCCATGAGCCCCGAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcagatctccccctcccccaccgccgcctcctcctcctcctcccccctccagcattccgcccctccctccaccggcttagtgggctgcgaagctt...
species | Oryza sativa |
transcript | LOC_Os07g44350.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|88307564|gb|CI643413.1|CI643413
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|88718251|gb|CI741340.1|CI741340
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCCGTCCAAEST: gi|88311877|gb|CI577483.1|CI577483
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|88741079|gb|CI764587.1|CI764587
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|1631762|gb|C19491.1|C19491
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|58596898|gb|CK007426.1|CK007426
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|88402802|gb|CI613250.1|CI613250
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|568736|gb|D39585.1|D39585
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAAEST: gi|25803199|gb|CA759160.1|CA759160
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
EST: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCA GAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
genomic: GAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcaga ... tcgtttgcagGAATGGGTTCCAGAAGATGGACAAGATCAAGGACTCCAACAGGCAGTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGCAAGAGAGAGAGAAAGCCATGGCGAGCGACGTGCCCATGAGCCCCGAGCTGGAGCAGGTGGACGGCGAGATCCAGGACATCTTCCGCGCGCTCCAgtgagtcagatctccccctcccccaccgccgcctcctcctcctcctcccccctccagcattccgcccctccctccaccggcttagtgggctgcgaagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgcg