1 5' 3' | 2 5' 3' | 3 5' 3' |
TCAACCTGCTCCGCGCCTTCGCCACGGGAGGGTACGCCGCCATGCAGCGCGTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaattcatttctctccccttttttttcatacgattttttagcactttttgttgcggaagttgttaaagtcgctttcgatttaaaagatatcagtg...
species | Oryza sativa |
transcript | LOC_Os07g42960.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAG GTACCGTGAATTGGCACACCGGGTGGATGAGGCACTEST: gi|88394017|gb|CI684285.1|CI684285
genomic: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaatt ... ttgtgtatagGTACCGTGAATTGGCACACCGGGTGGATGAGGCACT
EST: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAG GTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGCEST: gi|88321666|gb|CI672807.1|CI672807
genomic: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaatt ... ttgtgtatagGTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGC
EST: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAG GTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGEST: gi|428990|gb|D25146.1|D25146
genomic: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaatt ... ttgtgtatagGTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTG
EST: CTCGATTTCATGGATCACAGCGAACAAGGAGACAG GTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGCEST: gi|88331323|gb|CI675653.1|CI675653
genomic: CTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaatt ... ttgtgtatagGTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGC
EST: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAG GTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGC
genomic: GTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaatt ... ttgtgtatagGTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACCTGCTCCGCGCCTTCGCCACGGGAGGGTACGCCGCCATGCAGCGCGTCACGCAGTGGAACCTCGATTTCATGGATCACAGCGAACAAGGAGACAGgtgagaaattcatttctctccccttttttttcatacgattttttagcactttttgttgcggaagttgttaaagtcgctttcgatttaaaagatatcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc