1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGCAGGACATCCAGATGATGCTCGCCGCGGACGTCCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatctgaaaccccccccctctgcctgcattatactcagatactcttgtgtacgatcgtcggctaccggtagatctgttcgtgttgttgatttgat...
species | Oryza sativa |
transcript | LOC_Os07g42450.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58654399|gb|CK043079.1|CK043079
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTGAGGAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTEST: gi|218493262|gb|FG949073.1|FG949073
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATT-ATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCT
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGEST: gi|29680688|gb|CB676963.1|CB676963
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|218501372|gb|FG950520.1|FG950520
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58667560|gb|CK056246.1|CK056246
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|2310638|gb|C26793.1|C26793
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58686193|gb|CK074880.1|CK074880
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58679244|gb|CK067931.1|CK067931
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|66915310|gb|CX102158.1|CX102158
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|29680643|gb|CB676918.1|CB676918
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|86830369|gb|CI290483.1|CI290483
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58608869|gb|CK036902.1|CK036902
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|218488066|gb|FG950219.1|FG950219
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58684315|gb|CK073002.1|CK073002
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58660718|gb|CK049398.1|CK049398
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|88314244|gb|CI602576.1|CI602576
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58682367|gb|CK071054.1|CK071054
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|55410359|gb|CV722735.1|CV722735
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58601038|gb|CK011566.1|CK011566
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|88731627|gb|CI755240.1|CI755240
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|88329995|gb|CI652384.1|CI652384
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAANTGGGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAACACCTGCGACAAGCTCCAGTTGGCTGEST: gi|58659623|gb|CK048303.1|CK048303
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|218482676|gb|FG959725.1|FG959725
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTGEST: gi|58656933|gb|CK045613.1|CK045613
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
EST: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACG GTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
genomic: GAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatct ... tgtttttcagGTATCTACATTATTAACCTTGGCAAGACCTGGGAGAAGCTCCAGTTGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAGGACATCCAGATGATGCTCGCCGCGGACGTCCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgtaccgatctgaaaccccccccctctgcctgcattatactcagatactcttgtgtacgatcgtcggctaccggtagatctgttcgtgttgttgatttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcggc