1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTCATCCTCCTCCTCCTCCTCCGCCGCCGCCTCCCTCCTCCCCCACCTCCACTCTCCACTCCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAGgtaaggctccgatcgagacctatccattccagagcagtctcgatctcgtcacccatggatttcgagatttgatgcgcccttttttttggctcgcag
species | Oryza sativa |
transcript | LOC_Os07g41750.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCGCAAG TTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGCEST: gi|58676042|gb|CK064729.1|CK064729
genomic: AGAAGCGCAAGgtaaggctcc ... tggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
EST: CACTCTCCACTCCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAG TTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGCEST: gi|38477436|gb|CF961569.1|CF961569
genomic: CACTCTCCACTCCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAGgtaaggctcc ... tggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
EST: CCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAG TTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGCEST: gi|58586460|gb|CF984768.1|CF984768
genomic: CCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAGgtaaggctcc ... tggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
EST: AGATCAGCAAGAAGCGCAAG TTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGAGGGTGACGCGCEST: gi|25801300|gb|CA757261.1|CA757261
genomic: AGATCAGCAAGAAGCGCAAGgtaaggctcc ... tggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
EST: ATGGCGATTCACACGCAGATCAGCAAGAAGCGCAAG TTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGCEST: gi|38477659|gb|CF961792.1|CF961792
genomic: ATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAGgtaaggctcc ... tggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
EST: CACTCTCCACTCCAATGGCGACTCACACGCAGATCAGCAGGAAGCGCAAG TTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
genomic: CACTCTCCACTCCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAGgtaaggctcc ... tggctcgcagTTCGTGGCGGATGGGGTGTTCTTCGCGGAGCTGAACGAGATGCTGACGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCATCCTCCTCCTCCTCCTCCGCCGCCGCCTCCCTCCTCCCCCACCTCCACTCTCCACTCCAATGGCGACTCACACGCAGATCAGCAAGAAGCGCAAGgtaaggctccgatcgagacctatccattccagagcagtctcgatctcgtcacccatggatttcgagatttgatgcgcccttttttttggctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC