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AAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacccatcctctccctccctccctttctccacgttcccgccgggcgcagcggatctggtttcgtgtttccttgcccttctcctccgtgcgcgtt...
species | Oryza sativa |
transcript | LOC_Os07g37740.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGEST: gi|88357103|gb|CI615990.1|CI615990
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCG
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGAGGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGEST: gi|88362315|gb|CI608706.1|CI608706
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCG
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGEST: gi|7332504|gb|AU085850.1|AU085850
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCG
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGEST: gi|88359656|gb|CI622346.1|CI622346
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCG
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGEST: gi|88373329|gb|CI614665.1|CI614665
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCG
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGEST: gi|88362933|gb|CI614289.1|CI614289
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCG
EST: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCG GAACAAGCGCGTGGTAATGCTTGGAGGGCAGCCCAGCTATGGCGGCGGCGC
genomic: GGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacc ... ttctctgtagGAACAAGCGCGTGGTAAGGCT-GGAGGGCAGCCCAGCTATGGCGGCGGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCCAAGCCGACCCCCGAGGGAAGGGGAAGACGGGGCCGAGATGGCGGGGCGCTACGACAGCAACCCCTTCGAGGAGGACGACGTGAACCCTTTCTCGgtgaggaacccatcctctccctccctccctttctccacgttcccgccgggcgcagcggatctggtttcgtgtttccttgcccttctcctccgtgcgcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc