1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCAGATTGCTCTTGAAAGGTAACTGGTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAGgtatgttctgtccatatctgcgtgtttgttgtcttgttctggagagtctaatttttatgcgattatag
species | Oryza sativa |
transcript | LOC_Os07g36470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAG TGCACGACCCAAGATGCAGAATGGCATAGTTCCAAATGGAGAGGCTTCAAAEST: gi|58691898|gb|CK080585.1|CK080585
genomic: GTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAGgtatgttctg ... gcgattatagTGCACGACCCAAGATGCAGAATGGCATAGTTCCAAATGGAGAGGCTTCAAA
EST: AACTGGTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAG TGCACGACCCAAGATGCAGAATGGCATAGTTCCAAATGGAGAGGCTTCAAAEST: gi|58682821|gb|CK071508.1|CK071508
genomic: AACTGGTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAGgtatgttctg ... gcgattatagTGCACGACCCAAGATGCAGAATGGCATAGTTCCAAATGGAGAGGCTTCAAA
EST: AACTGGTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAG TGCACGACCCAAGATGCAGAATGGCATAGTTCCAAATGGAGAGGCTTCAAA
genomic: AACTGGTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAGgtatgttctg ... gcgattatagTGCACGACCCAAGATGCAGAATGGCATAGTTCCAAATGGAGAGGCTTCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGATTGCTCTTGAAAGGTAACTGGTTTGTGCAAGAAAAAAGTTGTAAGATATTGACCCAAATAATAAGgtatgttctgtccatatctgcgtgtttgttgtcttgttctggagagtctaatttttatgcgattatag
- - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGAAA