Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCTTCCGGTTGCTTCCGCCGATCGACTTCTCGCCCCCCAAATCGATTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctctcgtctcgatcccccaacggagccggccgaattcgcgaggattcgggaggttttccctctgcgttcgtttctgcggatgatttgttttttttttcttttggtggatcggtttgatcgaggggagacgttgaccttgggggtttgtttctgatgatcgattgatgatttgattcgcag

Basic information

species Oryza sativa
transcript LOC_Os07g32800.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38468908|gb|CF953039.1|CF953039
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88325173|gb|CI646593.1|CI646593
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33676891|gb|CF305130.1|CF305130
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33805109|gb|CF328432.1|CF328432
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|27577219|gb|CA999913.1|CA999913
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33680432|gb|CF308671.1|CF308671
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33684983|gb|CF313222.1|CF313222
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88372196|gb|CI641831.1|CI641831
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|38470484|gb|CF954615.1|CF954615
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACNTTATCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGAC--T-TCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88415626|gb|CI589218.1|CI589218
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55440920|gb|CV733773.1|CV733773
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88330287|gb|CI658598.1|CI658598
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33662440|gb|CF293407.1|CF293407
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33817317|gb|CF334495.1|CF334495
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33688262|gb|CF316501.1|CF316501
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33672976|gb|CF301215.1|CF301215
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCTCTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33657649|gb|CF280263.1|CF280263
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|27576096|gb|CA998790.1|CA998790
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88325362|gb|CI675159.1|CI675159
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55441187|gb|CV733909.1|CV733909
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33658967|gb|CF281580.1|CF281580
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCTCTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33656988|gb|CF279602.1|CF279602
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|38479023|gb|CF963156.1|CF963156
EST:     TTCGCCCCCCGGGTCGATCGATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55412176|gb|CV724552.1|CV724552
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTTCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33663342|gb|CF294309.1|CF294309
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88334193|gb|CI641244.1|CI641244
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33654936|gb|CF277550.1|CF277550
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|14191784|gb|AU183995.1|AU183995
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33684608|gb|CF312847.1|CF312847
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33682793|gb|CF311032.1|CF311032
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33655241|gb|CF277855.1|CF277855
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33656069|gb|CF278683.1|CF278683
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33661955|gb|CF292922.1|CF292922
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88240847|gb|CI238698.1|CI238698
EST:     CGATCTATCGATTCCGCGTCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: CGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88307437|gb|CI643278.1|CI643278
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55414951|gb|CV727327.1|CV727327
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33688906|gb|CF317145.1|CF317145
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|4969227|gb|AU066131.1|AU066131
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCA--NCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33658993|gb|CF281606.1|CF281606
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCTCTTTCTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88575888|gb|CI670033.1|CI670033
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55410369|gb|CV722745.1|CV722745
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33824950|gb|CF338279.1|CF338279
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33688056|gb|CF316295.1|CF316295
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33826074|gb|CF338843.1|CF338843
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33693404|gb|CF321643.1|CF321643
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33690347|gb|CF318586.1|CF318586
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33693405|gb|CF321644.1|CF321644
EST:     ATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: ATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|38468995|gb|CF953126.1|CF953126
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33655071|gb|CF277685.1|CF277685
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCGGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88308707|gb|CI653594.1|CI653594
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33826568|gb|CF339093.1|CF339093
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|2280785|gb|C25280.1|C25280
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGC-CCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33685965|gb|CF314204.1|CF314204
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|13420824|gb|AU174914.1|AU174914
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAG-GCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33680632|gb|CF308871.1|CF308871
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|86906123|gb|CI292654.1|CI292654
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33825635|gb|CF338630.1|CF338630
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55434778|gb|CV730513.1|CV730513
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33691313|gb|CF319552.1|CF319552
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33692731|gb|CF320970.1|CF320970
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33656913|gb|CF279527.1|CF279527
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33684452|gb|CF312691.1|CF312691
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33691086|gb|CF319325.1|CF319325
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|4969408|gb|AU066312.1|AU066312
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCA--NCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33682358|gb|CF310597.1|CF310597
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88355164|gb|CI651867.1|CI651867
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGNAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|33670500|gb|CF298739.1|CF298739
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCTA-CTCNC-CTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|55411604|gb|CV723980.1|CV723980
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACTTTTTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|86899287|gb|CI298132.1|CI298132
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88575414|gb|CI669559.1|CI669559
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|2311820|gb|C27975.1|C27975
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCA--GCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
EST: gi|88310832|gb|CI659435.1|CI659435
EST:     TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCG                         GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG
genomic: TTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 267

TCCTTCCTTCCGGTTGCTTCCGCCGATCGACTTCTCGCCCCCCAAATCGATTCGCCCCCCGCCTCGATCTATCGATTCCGCGGCAGCGCCCCTTCGATCGgtgagcctct ... tgattcgcagGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG




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