Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTTCCAACAACCTCTCCGCCTCCTCGTCCCCGTCCTCAACCTCACCGCCTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcatgcctccccttccccttccccttccccttcccctccatgatcggaattgaatccaaagcctcgagctcctcaacctccccgactgcctcat...

Basic information

species Oryza sativa
transcript LOC_Os07g26610.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58661803|gb|CK050483.1|CK050483
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88734604|gb|CI758112.1|CI758112
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88355792|gb|CI626233.1|CI626233
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88372673|gb|CI612601.1|CI612601
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88387369|gb|CI580714.1|CI580714
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88732757|gb|CI755934.1|CI755934
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|33678513|gb|CF306752.1|CF306752
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88740835|gb|CI763350.1|CI763350
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGGAAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCA-GGG-AAGATCATTCAAAATGCATTCTTGGCACAACATCGCCC
EST: gi|88739121|gb|CI762629.1|CI762629
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
EST: gi|88300211|gb|CI582445.1|CI582445
EST:     CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAG                         CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC
genomic: CTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 48 (downstream exon)
Score: 4

CCGTTCCAACAACCTCTCCGCCTCCTCGTCCCCGTCCTCAACCTCACCGCCTCCCCGCCGCAGTAGCAGAGTCGCCCGCCGCCGCGCATCCGCATGGCAGgtcagtgcat ... atttgtgcagCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCACAGGCTAGACACAGCACAAGATATCCCAGTGACTTTTGTGCCCTCGATAC




<











<


<